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View Structure Prediction Details

Protein: gi|7460037, gi|7...
Organism: Arabidopsis thaliana
Length: 457 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7460037, gi|7....

Description E-value Query
Range
Subject
Range
gi|71905527, gi|... - gi|71905527|gb|AAZ52741.1| hypothetical protein At4g29200 [Arabidopsis thaliana], gi|60547869|gb|AAX...
338.0 [0..150] [457..1]

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Predicted Domain #1
Region A:
Residues: [1-191]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MICVPGPIIE ALSSTTLSGA GEASVHRHRD PNFSSFRRYF VTLVSFFIFP LLKLFPILSP  60
   61 LVIPLVIPAH NLLTNLPHLA SLPGRSSTQI KEGRLKQHAL SFSHSSAAAL WTDSCSELSH 120
  121 VEKDATPWIF ATYLSHGHSL LPTIFHSSEM TPALQIISPF LDSRRSTSAF WHLDMKLGFS 180
  181 PVDLVSFAGP F

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [192-343]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPFRPKPICC FRTCKAFILR SDFFNSMLGP LIFLCRSPLI NGHGHHLIEI SPWRFWFFIY  60
   61 HLRILVLAIS RNVWPHSKVL KTFSLIFLNC TCLCVKCGFE LWVFIAQWSP SSSSIAFKLI 120
  121 TMSIIMFHCL IVYAAIDRRF VCLLCWILKL TL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [344-457]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDYRTIVLRI LAILFPWVLQ LAPVRSIASM SLSTSLRPLT VTNLLSFDYF EDDPSIYCDL  60
   61 TCCTVLLCLC LKALMEFKSM HFIFLFMVLG NTVCCNALIF EFLNSISCNC SMFH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle