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View Structure Prediction Details

Protein: gi|16974529, gi|...
Organism: Arabidopsis thaliana
Length: 229 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16974529, gi|....

Description E-value Query
Range
Subject
Range
gi|7487679, gi|7... - pir||T04210 hypothetical protein T5C23.60 - Arabidopsis thaliana, gi|7267863|emb|CAB78206.1| putati...
266.0 [0..1] [229..1]

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Predicted Domain #1
Region A:
Residues: [1-108]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSIRSSTRL LQRHRFSISN TLRFTSSSSS SGSWSENESR MVGFDSFPCT RAATYLISSL  60
   61 KNVGFSSSAI PKQDFKYSLR CFSTTGDSVQ STPQGSPESD CVVPQRIK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [109-229]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FKRLDKTAKH IMQIVDKEAV EEVRNLREIP EIKPGYIVQL KVEVPENKRR VSIVKGVVIA  60
   61 RRNAGLNSTF RIRRLVAGVG VESMFPLYSP NLREIKVVDK KKVRRAKLYY LRDKVNALKK 120
  121 H

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.522879
Match: 1vs6P
Description: No description for 1vs6P was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 3.79170826245673 bayes_pls_golite062009
structural molecule activity 3.49833752110162 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle