| Protein: | gi|6996266, gi|1... |
| Organism: | Arabidopsis thaliana |
| Length: | 989 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6996266, gi|1....
| Description | E-value | Query Range |
Subject Range |
|
|
943.0 | [0..1] | [989..41] |
|
Region A: Residues: [1-98] |
1 11 21 31 41 51
| | | | | |
1 MSDYGEKTCP LCAEEMDLTD QQLKPCKCGY QICVWCWHHI MDMAEKDQSE GRCPACRTPY 60
61 DKEKIVGMTV DQERLASEGN MDRKKIQKSK PKSSDGRK
|
| Detection Method: |  |
| Confidence: | 32.69897 |
| Match: | 1e4uA |
| Description: | Not-4 N-terminal RING finger domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.0938889867773109 | bayes_pls_golite062009 |
|
Region A: Residues: [99-196] |
1 11 21 31 41 51
| | | | | |
1 PLTSVRVVQR NLVYIVGLPL NLADEDLLQR KEYFGQYGKV LKVSMSRTAT GLIQQFPNNT 60
61 CSVYITYGKE EEAIRCIQSV HGFILDGKAL KACFGTTK
|
| Detection Method: | |
| Confidence: | 27.39794 |
| Match: | 2cpiA |
| Description: | Solution structure of the RNA recognition motif of CNOT4 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [197-396] |
1 11 21 31 41 51
| | | | | |
1 YCHAWLRNVA CNNQDCLYLH EVGSQEDSFT KDEIISAHTR VQQITGATNT MQYRSGSMLP 60
61 PPLDAYTSDS STGNPIAKVP SSTSVSAPKS SPPSGSSGKS TALPAAASWG ARLTNQHSLA 120
121 TSALSNGSLD NQRSTSENGT LATSTVVTKA ANGPVSSSNS LQKAPLKEEI QSLAEKSKPG 180
181 VLKPLQQKIV LDPESKRTTS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [397-503] |
1 11 21 31 41 51
| | | | | |
1 PNRDPSSNQI SCLVESSYNS RVIDKPSAVE NSLEHTSEIA EDVFDVGKLS ADVAWMGITT 60
61 NSRDETPGVP VVIGTHCDLG SITQSDNDVQ NLEQCRKQSP TNTYAEA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [504-658] |
1 11 21 31 41 51
| | | | | |
1 DISLNGIHGS RPEWDWRSGL QSQIDVKEPL EVNDFSSFNN NRRGIAEAVS HSTSKFSSSI 60
61 SILDSNHLAS RSFQNRETSC GMDSKTGSSF EIGSDRLHLP NGFSEKAMSN MEHSLFANEG 120
121 RSNIQNTEDD IISNILDFDP WDESLTSQHN FAKLL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [659-751] |
1 11 21 31 41 51
| | | | | |
1 GQSDHRASTL ESSNLLKQHN DQSRFSFARH EESNSQAYDN RSYSIYGQLS RDQPLQEFGA 60
61 NRDMYQDKLG SQNGFASNYS GGYEQFATSP GLS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [752-820] |
1 11 21 31 41 51
| | | | | |
1 SYKSPVARTQ VSAPPGFSAP NRLPPPGFSS HQRGDLSSDI ASGTRLLDSA NLLRNAYHVP 60
61 PPSGNLNAA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [821-989] |
1 11 21 31 41 51
| | | | | |
1 GDIEFIDPAI LAVGRGRLHN GMETADFDLR SGFSSQLNSF DNDARLQLLA QRSLAAQQVN 60
61 GFHDPRNVNN FSSSFSDPYG ISSRPTDQTQ GTGLSPFTQL PRQASANPLL SNGHWDNKWN 120
121 EPQSGNNLGI TQLLRNERMG FNDNVYSGFE EPKFRRPGPG DPYNRTYGI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
