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View Structure Prediction Details

Protein: gi|6996266, gi|1...
Organism: Arabidopsis thaliana
Length: 989 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6996266, gi|1....

Description E-value Query
Range
Subject
Range
gi|110737331 - gi|110737331|dbj|BAF00611.1| hypothetical protein [Arabidopsis thaliana]
943.0 [0..1] [989..41]

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Predicted Domain #1
Region A:
Residues: [1-98]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDYGEKTCP LCAEEMDLTD QQLKPCKCGY QICVWCWHHI MDMAEKDQSE GRCPACRTPY  60
   61 DKEKIVGMTV DQERLASEGN MDRKKIQKSK PKSSDGRK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.69897
Match: 1e4uA
Description: Not-4 N-terminal RING finger domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.0938889867773109 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [99-196]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLTSVRVVQR NLVYIVGLPL NLADEDLLQR KEYFGQYGKV LKVSMSRTAT GLIQQFPNNT  60
   61 CSVYITYGKE EEAIRCIQSV HGFILDGKAL KACFGTTK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.39794
Match: 2cpiA
Description: Solution structure of the RNA recognition motif of CNOT4
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [197-396]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YCHAWLRNVA CNNQDCLYLH EVGSQEDSFT KDEIISAHTR VQQITGATNT MQYRSGSMLP  60
   61 PPLDAYTSDS STGNPIAKVP SSTSVSAPKS SPPSGSSGKS TALPAAASWG ARLTNQHSLA 120
  121 TSALSNGSLD NQRSTSENGT LATSTVVTKA ANGPVSSSNS LQKAPLKEEI QSLAEKSKPG 180
  181 VLKPLQQKIV LDPESKRTTS 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [397-503]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNRDPSSNQI SCLVESSYNS RVIDKPSAVE NSLEHTSEIA EDVFDVGKLS ADVAWMGITT  60
   61 NSRDETPGVP VVIGTHCDLG SITQSDNDVQ NLEQCRKQSP TNTYAEA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [504-658]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DISLNGIHGS RPEWDWRSGL QSQIDVKEPL EVNDFSSFNN NRRGIAEAVS HSTSKFSSSI  60
   61 SILDSNHLAS RSFQNRETSC GMDSKTGSSF EIGSDRLHLP NGFSEKAMSN MEHSLFANEG 120
  121 RSNIQNTEDD IISNILDFDP WDESLTSQHN FAKLL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [659-751]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQSDHRASTL ESSNLLKQHN DQSRFSFARH EESNSQAYDN RSYSIYGQLS RDQPLQEFGA  60
   61 NRDMYQDKLG SQNGFASNYS GGYEQFATSP GLS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [752-820]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SYKSPVARTQ VSAPPGFSAP NRLPPPGFSS HQRGDLSSDI ASGTRLLDSA NLLRNAYHVP  60
   61 PPSGNLNAA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [821-989]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDIEFIDPAI LAVGRGRLHN GMETADFDLR SGFSSQLNSF DNDARLQLLA QRSLAAQQVN  60
   61 GFHDPRNVNN FSSSFSDPYG ISSRPTDQTQ GTGLSPFTQL PRQASANPLL SNGHWDNKWN 120
  121 EPQSGNNLGI TQLLRNERMG FNDNVYSGFE EPKFRRPGPG DPYNRTYGI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle