YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7413588, gi\|1...
Organism:	Arabidopsis thaliana
Length:	283 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7413588, gi|1....

Description	E-value	Query Range	Subject Range
gi\|25363711, gi\|... - gi\|4371291\|gb\|AAD18149.1\| hypothetical protein [Arabidopsis thaliana], gi\|28827662\|gb\|AAO50675.1\| un...	287.0	[0..4]	[273..5]
gi\|92868241 - gi\|92868241\|gb\|ABE78312.1\| conserved hypothetical protein [Medicago truncatula]	131.0	[0..4]	[269..5]
gi\|50932043, gi\|... - gi\|50932043\|ref\|XP_475549.1\| hypothetical protein [Oryza sativa (japonica cultivar-group)], gi\|47900...	57.0	[0..7]	[267..4]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMISRRPVSS PGRVEKYPPP FMGFLRSKSN GGSTSRSRSR SRGRSRASPL FVRRNKSAAA  60
   61 VAQEPSSPKV TCMGQVRVNR SKPKIKPESR DNPTRRRCEW LRNASFYNKF AGKIKTMTFW 120
  121 PKWRLCSFSC ACRNLKEKDS PRSQLDH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [148-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTTESVREIK EEIEGEENFE IPKLFVSPAT TPPINALLLT RSRSAPYRSS SLAFRFWEEN  60
   61 NQREVESQQN VRSEKTDSEV PIEKINGFHE PEYVDRDEEE FTKLRFVRQP VLTRSKSEPA 120
  121 RIGEKMMVLL PDEEEG