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View Structure Prediction Details

Protein: FLD_ARATH
Organism: Arabidopsis thaliana
Length: 789 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLD_ARATH.

Description E-value Query
Range
Subject
Range
gi|61661322 - gi|61661322|gb|AAX51267.1| flowering locus D [Arabidopsis thaliana]
613.0 [0..1] [779..1]
LDL3_ORYSJ - Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa subsp. japonica GN=Os04g0560300 PE=2...
486.0 [0..15] [777..24]
LDL3_ORYSI - Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa subsp. indica GN=B0103C08-B0602B01.1...
485.0 [0..25] [777..37]

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Predicted Domain #1
Region A:
Residues: [1-91]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSFSAPKKR RRGRSQRSMS SLNSLPVPNV GLLPGNSNFV SSSASSSGRF NVEVVNGSNQ  60
   61 TVKSYPGIGD EIITINKEAT TEALLALTAG F

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.714 c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.714 c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.682 c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.682 c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.635 d.223.1 Polo domain
View Download 0.608 b.1.2 Fibronectin type III
View Download 0.608 b.1.2 Fibronectin type III
View Download 0.546 b.24.1 Hyaluronate lyase-like, C-terminal domain
View Download 0.546 b.24.1 Hyaluronate lyase-like, C-terminal domain

Predicted Domain #2
Region A:
Residues: [92-435]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PADSLTEEEI EFGVVPIVGG IEQVNYILIR NHIISKWREN ISSWVTKEMF LNSIPKHCSS  60
   61 LLDSAYNYLV THGYINFGIA QAIKDKFPAQ SSKSSVIIVG AGLSGLAAAR QLMRFGFKVT 120
  121 VLEGRKRPGG RVYTKKMEAN RVGAAADLGG SVLTGTLGNP LGIIARQLGS SLYKVRDKCP 180
  181 LYRVDGKPVD PDVDIKVEVA FNQLLDKASK LRQLMGDVSM DVSLGAALET FRQVSGNDVA 240
  241 TEEMGLFNWH LANLEYANAG LVSKLSLAFW DQDDPYDMGG DHCFLPGGNG RLVQALAENV 300
  301 PILYEKTVQT IRYGSNGVKV TAGNQVYEGD MVLCTVPLGV LKNG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.522879
Match: 1ps9A
Description: The Crystal Structure and Reaction Mechanism of E. coli 2,4-Dienoyl CoA Reductase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [436-511]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SIKFVPELPQ RKLDCIKRLG FGLLNKVAML FPYVFWSTDL DTFGHLTEDP NYRGEFFLFY  60
   61 SYAPVAGGAL LIALVA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.09691
Match: 1v0jA
Description: Udp-galactopyranose mutase from Mycobacterium Tuberculosis
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [512-638]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEAAHKFETM PPTDAVTRVL HILRGIYEPQ GINVPDPLQT VCTRWGGDPF SLGSYSNVAV  60
   61 GASGDDYDIL AESVGDGRLF FAGEATTRRY PATMHGAFVT GLREAANMAQ SAKARGIRKR 120
  121 IDRNPSR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.0
Match: 2v1dA
Description: No description for 2v1dA was found.

Predicted Domain #5
Region A:
Residues: [639-789]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NAHSCAILLA DLFRDPDLEF GSFCIIFSRR NPDPKSPAIL RVTLSEPRKR NEDPKADQHS  60
   61 NKILFQQLQS HFNQQQQIQV YTLLTRQQAL DLREVRGGDE KRLYYLCETL GVKLVGRKGL 120
  121 GVGADSVIAS IKAERTGRKL PSSSTSGTKS G

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle