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View Structure Prediction Details

Protein: gi|2832680, gi|7...
Organism: Arabidopsis thaliana
Length: 471 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2832680, gi|7....

Description E-value Query
Range
Subject
Range
gi|88789693, gi|... - gi|88813060|ref|ZP_01128302.1| Phospholipase/Carboxylesterase [Nitrococcus mobilis Nb-231], gi|88789...
161.0 [0..283] [470..21]

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Predicted Domain #1
Region A:
Residues: [1-94]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARTFILWLH GLGDSGPANE PIQTQFKSSE LSNASWLFPS APFNPVTCNN GAVMRSWFDV  60
   61 PELPFKVGSP IDESSVLEAV KNVHAIIDQE IAEG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.69897
Match: 1fj2A
Description: Acyl protein thioesterase 1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [95-347]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNPENVFICG LSQGGALTLA SVLLYPKTLG GGAVLSGWVP FTSSIISQFP EEAKKVPHLC  60
   61 FLINTPILWS HGTDDRMVLF EAGQAALPFL KEAGVTCEFK AYPGLGHSIS NKELKYIESW 120
  121 IKRRLKDILQ NKTFFERSIS RENGEGMRTS RLKKPIVLLT IALLSSVFFF AFFFLNKSDV 180
  181 SSTSALRNRD SMARTFILWL HGLGDSGPAN EPIKTLFRSQ EFRNTKWLFP SAPPNPVSCN 240
  241 YGAVMPSWFD IPE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.09691
Match: 2d81A
Description: PHB depolymerase (S39A) complexed with R3HB trimer
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 2.24106351016868 bayes_pls_golite062009
catalytic activity 1.39629727416851 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 1.09488027320166 bayes_pls_golite062009
lipase activity 0.849473630399459 bayes_pls_golite062009
carboxylesterase activity 0.424330502936163 bayes_pls_golite062009
palmitoyl-(protein) hydrolase activity 0.277033874372149 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [348-471]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPLTAGSPKD ESSLLKAVKN VHAIIDKEIA GGINPENVYI CGFSQGGALT LASVLLYPKT  60
   61 IGGGAVFSGW IPFNSSITNQ FTEDAKKTPI LWSHGIDDKT VLFEAGQAAL PFLQQAGVTC 120
  121 EFKV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.69897
Match: 2fukA
Description: No description for 2fukA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle