YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: FRL2I_ARATH
Organism: Arabidopsis thaliana
Length: 473 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FRL2I_ARATH.

Description E-value Query
Range
Subject
Range
gi|82621112 - gi|82621112|gb|ABB86244.1| unknown [Solanum tuberosum]
409.0 [0..2] [434..66]

Back

Predicted Domain #1
Region A:
Residues: [1-124]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAAESIAAS INQIDEKKQK LKKAFDDLQA HRSLLSPSFN LSWSEIDSHF SSLQSSLFNR  60
   61 LQSAVTSSNS GNIETPTAVT TETPVLWPEL RKFCEKNDGK GLGNYMIENS RKRLSINEEL 120
  121 PNAI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.154902
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [125-357]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RCSENPAPLV LDAIEGSYHC SSPSSSSSAR AIDVKRIFVL LLEALIEINA NLTNDLRERA  60
   61 RTIAYDWKPN IGNKPSEALG FLHLVAAFEL GSLFSTEEIC DYIFLISKYK QATTICKKIG 120
  121 LDRNRIGVLV QKFLDTGRLL VAIRFIYENE MVGEFEPVSI LKTSLKNSRE AAKRVCAEGN 180
  181 YSLKVQNEAT DKELSALRAV IKVVKEKNIE SEFMEEKLEE CVKELEDQKA QRK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [358-473]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RATKFNSPAN PQQPQEQKVD NKRPRVANGS SMEYNLTIPP LRPQQQPPLL PTPSQILQVN  60
   61 PYGLLSSILP GVAVPYGNPR ALFGSVPAPA SRPVFYVQQT GYGMPPPQYR PPYYPQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle