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View Structure Prediction Details

Protein: FRL2I_ARATH
Organism: Arabidopsis thaliana
Length: 473 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FRL2I_ARATH.

Description E-value Query
Range
Subject
Range
gi|82621112 - gi|82621112|gb|ABB86244.1| unknown [Solanum tuberosum]
409.0 [0..2] [434..66]

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Predicted Domain #1
Region A:
Residues: [1-124]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAAESIAAS INQIDEKKQK LKKAFDDLQA HRSLLSPSFN LSWSEIDSHF SSLQSSLFNR  60
   61 LQSAVTSSNS GNIETPTAVT TETPVLWPEL RKFCEKNDGK GLGNYMIENS RKRLSINEEL 120
  121 PNAI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.154902
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [125-357]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RCSENPAPLV LDAIEGSYHC SSPSSSSSAR AIDVKRIFVL LLEALIEINA NLTNDLRERA  60
   61 RTIAYDWKPN IGNKPSEALG FLHLVAAFEL GSLFSTEEIC DYIFLISKYK QATTICKKIG 120
  121 LDRNRIGVLV QKFLDTGRLL VAIRFIYENE MVGEFEPVSI LKTSLKNSRE AAKRVCAEGN 180
  181 YSLKVQNEAT DKELSALRAV IKVVKEKNIE SEFMEEKLEE CVKELEDQKA QRK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [358-473]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RATKFNSPAN PQQPQEQKVD NKRPRVANGS SMEYNLTIPP LRPQQQPPLL PTPSQILQVN  60
   61 PYGLLSSILP GVAVPYGNPR ALFGSVPAPA SRPVFYVQQT GYGMPPPQYR PPYYPQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
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