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View Structure Prediction Details

Protein: IF4B3_ARATH
Organism: Arabidopsis thaliana
Length: 452 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IF4B3_ARATH.

Description E-value Query
Range
Subject
Range
gi|70878103 - gi|70878103|gb|EAN91386.1| trans-sialidase, putative [Trypanosoma cruzi]
gi|71648919 - gi|71648919|ref|XP_813237.1| trans-sialidase [Trypanosoma cruzi strain CL Brener]
252.0 [0..3] [450..797]

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Predicted Domain #1
Region A:
Residues: [1-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAVSSVWA KPGAWALEAE EHEAELKQQP SPTNQKSSAE DSSDFPSLAA AATTKTKKKK  60
   61 GQTISLAEFA TYGTAKAKPA PQTERLTQAE LVALPTGPRE RSAEELDRSK LGGGFRSYGG 120
  121 GRYGDESSSS RWGSSRVSED GERRGGGFNR DREPSRDSGP SRADEDDNW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [170-268]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAAKKPISGN GFERRERGSG GGFFESQSQS KADEVDSWVS TKPSEPRRFV SSNGGGGDRF  60
   61 EKRGSFESLS RNRDSQYGGG GGSESDTWGR RREESGAAN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [269-452]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSPPPSGGSR PRLVLQPRTL PVAVVEVVKP ESPVLVIVEK PKGANPFGNA RPREEVLAEK  60
   61 GQDWKEIDEK LEAEKLKDIA AAMEKPNEKS TGKMGFGLGN GRKDEERIER SWRKSTEHSE 120
  121 EDAQEEEPAV EGAKKEETED KPAVEEAKKE ETEGEQAVEE AKKEETGGEP AVEEAKKEET 180
  181 EDKI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle