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View Structure Prediction Details

Protein: gi|7269660, gi|7...
Organism: Arabidopsis thaliana
Length: 164 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7269660, gi|7....

Description E-value Query
Range
Subject
Range
gi|109461675 - gi|109461675|ref|XP_001079194.1| PREDICTED: similar to cytochrome c oxidase, subunit VIb polypeptide...
157.0 [0..77] [163..1]

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Predicted Domain #1
Region A:
Residues: [1-164]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVYPIPPSHF FVQTLKSQNS VVGFEEFSPE HKRRSLCHLV HRPRLTYGVR IIDVASPPRL  60
   61 VALFLEHRCA MRHGTPLARF LKPRIELKTA PADFRFPTTN QTRHCFTRYI EFHRYSCVIE 120
  121 CTTAKGEDAN ECERFAKYYR ALCPGEWVDK WNEQRETGTF PGPL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.154902
Match: 1occH
Description: Cytochrome c oxidase subunit h
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
cytochrome-c oxidase activity 8.77230386960109 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors 8.77230386960109 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor 8.77230386960109 bayes_pls_golite062009
heme-copper terminal oxidase activity 8.46183559370125 bayes_pls_golite062009
oxidoreductase activity 4.50321341105356 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 2.76266766775096 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 2.62061796927348 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 2.01112242780223 bayes_pls_golite062009
cation transmembrane transporter activity 1.80272347269033 bayes_pls_golite062009
ion transmembrane transporter activity 1.61931860759595 bayes_pls_golite062009
catalytic activity 0.287695754348243 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle