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View Structure Prediction Details

Protein: gi|52354359, gi|...
Organism: Arabidopsis thaliana
Length: 279 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52354359, gi|....

Description E-value Query
Range
Subject
Range
gi|11358066, gi|... - gi|6899930|emb|CAB71880.1| putative protein [Arabidopsis thaliana], gi|15228700|ref|NP_191779.1| unk...
258.0 [0..2] [208..4]

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Predicted Domain #1
Region A:
Residues: [1-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTAGKEDLG TADTAEAQYV MAKTSVWWDI ENCQVPKGLD AHGIAQNISS ALKKMNYCGR  60
   61 VSISAYGDTS GIPHVIQHAL NSTGIELHHV PAGVKDASDK KILVDMLFWA FDNPAPSNIM 120
  121 LISGDRDFSN ALHKLSLRRY NILLAHPPKA SAPLSQAATT VWLWTSLLA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.69897
Match: 2qipA
Description: No description for 2qipA was found.

Predicted Domain #2
Region A:
Residues: [170-279]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGNPLIRGKV KTSQLVANAS TSSNVMSSPP HNQFPDPPRS GPLHARQPYL NPDPFVNNRD  60
   61 PNAARPGPSN MRPLCPNAIR RHRQEKLERA LPLLILLVFM FMILATVNSN 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle