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View Structure Prediction Details

Protein: gi|52354359, gi|...
Organism: Arabidopsis thaliana
Length: 279 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52354359, gi|....

Description E-value Query
Range
Subject
Range
gi|11358066, gi|... - gi|6899930|emb|CAB71880.1| putative protein [Arabidopsis thaliana], gi|15228700|ref|NP_191779.1| unk...
258.0 [0..2] [208..4]

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Predicted Domain #1
Region A:
Residues: [1-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTAGKEDLG TADTAEAQYV MAKTSVWWDI ENCQVPKGLD AHGIAQNISS ALKKMNYCGR  60
   61 VSISAYGDTS GIPHVIQHAL NSTGIELHHV PAGVKDASDK KILVDMLFWA FDNPAPSNIM 120
  121 LISGDRDFSN ALHKLSLRRY NILLAHPPKA SAPLSQAATT VWLWTSLLA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.69897
Match: 2qipA
Description: No description for 2qipA was found.

Predicted Domain #2
Region A:
Residues: [170-279]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGNPLIRGKV KTSQLVANAS TSSNVMSSPP HNQFPDPPRS GPLHARQPYL NPDPFVNNRD  60
   61 PNAARPGPSN MRPLCPNAIR RHRQEKLERA LPLLILLVFM FMILATVNSN 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.239 a.26.1 4-helical cytokines


YRC Informatics Platform - Version 3.0
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