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View Structure Prediction Details

Protein: gi|25404681, gi|...
Organism: Arabidopsis thaliana
Length: 390 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25404681, gi|....

Description E-value Query
Range
Subject
Range
gi|30683061 - gi|30683061|ref|NP_172759.2| glycosyl transferase family 17 protein [Arabidopsis thaliana]
641.0 [0..1] [390..1]
gi|45433905 - gi|45433905|emb|CAF33485.2| putative N-acetylglucosaminyltransferase III [Cucumis sativus]
619.0 [0..1] [389..1]
gi|61845111 - gi|61845111|emb|CAI70376.1| beta 1,4 N-acetylglucosaminyltransferase [Populus alba x Populus tremula...
607.0 [0..5] [389..1]
gi|215695200, gi... - gi|50925145|ref|XP_472878.1| OSJNBa0044K18.7 [Oryza sativa (japonica cultivar-group)], gi|38605764|e...
gi|116309905, gi... - gi|125548719|gb|EAY94541.1| hypothetical protein OsI_16317 [Oryza sativa Indica Group], gi|116309905...
596.0 [0..10] [389..5]

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Predicted Domain #1
Region A:
Residues: [1-105]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWWMMGENGG HYCSKKSDDL CGTQESDRGF GISRLCCILR GVDLKSVLFL LVIMPMCVLG  60
   61 VYINALKISY FLRPLWESPP KPFHEIPHYH HENASMESLC KLHGW

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [106-236]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTREYPRRVY DAVLFSTEVE LLTIRWKELY PYVTQFVLLE SNSTFTGLPK PLVFAGHRDE  60
   61 FKFIEPRLTY GSIGGRFKKG EKNPFYEEAY QRIALDQLLR IAGITDDDLL IMSDVDEIPS 120
  121 RHTINLLRWC D

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [237-390]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIPQILHLRL KNYLYSFEFP VDDKSWRASV HRYQTGKTRY AHYRQSDVIL ADSGWHCSFC  60
   61 FRRISEFVFK MKAYSHYDRV RFAHYLNPKR VQRVICSGSD LFDMIPEEYT FKDIIGKMGP 120
  121 IPHSYSAVHL PAYLLENAER YKFLLPGNCL RDEE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle