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View Structure Prediction Details

Protein: gi|25404681, gi|...
Organism: Arabidopsis thaliana
Length: 390 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25404681, gi|....

Description E-value Query
Range
Subject
Range
gi|30683061 - gi|30683061|ref|NP_172759.2| glycosyl transferase family 17 protein [Arabidopsis thaliana]
641.0 [0..1] [390..1]
gi|45433905 - gi|45433905|emb|CAF33485.2| putative N-acetylglucosaminyltransferase III [Cucumis sativus]
619.0 [0..1] [389..1]
gi|61845111 - gi|61845111|emb|CAI70376.1| beta 1,4 N-acetylglucosaminyltransferase [Populus alba x Populus tremula...
607.0 [0..5] [389..1]
gi|215695200, gi... - gi|50925145|ref|XP_472878.1| OSJNBa0044K18.7 [Oryza sativa (japonica cultivar-group)], gi|38605764|e...
gi|116309905, gi... - gi|125548719|gb|EAY94541.1| hypothetical protein OsI_16317 [Oryza sativa Indica Group], gi|116309905...
596.0 [0..10] [389..5]

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Predicted Domain #1
Region A:
Residues: [1-105]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWWMMGENGG HYCSKKSDDL CGTQESDRGF GISRLCCILR GVDLKSVLFL LVIMPMCVLG  60
   61 VYINALKISY FLRPLWESPP KPFHEIPHYH HENASMESLC KLHGW

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [106-236]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTREYPRRVY DAVLFSTEVE LLTIRWKELY PYVTQFVLLE SNSTFTGLPK PLVFAGHRDE  60
   61 FKFIEPRLTY GSIGGRFKKG EKNPFYEEAY QRIALDQLLR IAGITDDDLL IMSDVDEIPS 120
  121 RHTINLLRWC D

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.686 N/A N/A c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.686 N/A N/A c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.639 N/A N/A c.49.1 Pyruvate kinase, C-terminal domain
View Download 0.638 N/A N/A c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.632 N/A N/A c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.617 N/A N/A c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.617 N/A N/A c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.607 N/A N/A c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.598 N/A N/A c.26.2 Adenine nucleotide alpha hydrolases-like
View Download 0.580 N/A N/A c.49.1 Pyruvate kinase, C-terminal domain
View Download 0.509 N/A N/A c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.414 N/A N/A c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.389 N/A N/A c.3.1 FAD/NAD(P)-binding domain
View Download 0.388 N/A N/A c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.368 N/A N/A c.26.2 Adenine nucleotide alpha hydrolases-like

Predicted Domain #3
Region A:
Residues: [237-390]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIPQILHLRL KNYLYSFEFP VDDKSWRASV HRYQTGKTRY AHYRQSDVIL ADSGWHCSFC  60
   61 FRRISEFVFK MKAYSHYDRV RFAHYLNPKR VQRVICSGSD LFDMIPEEYT FKDIIGKMGP 120
  121 IPHSYSAVHL PAYLLENAER YKFLLPGNCL RDEE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle