YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|91805951, gi\|...
Organism:	Arabidopsis thaliana
Length:	593 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|91805951, gi|....

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	620.0	[0..8]	[587..1164]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	600.0	[0..3]	[591..894]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	594.0	[0..7]	[587..1035]
gi\|148658115, gi... - gi\|148658115\|ref\|YP_001278320.1\| NB-ARC domain-containing protein [Roseiflexus sp. RS-1], gi\|1485702...	577.0	[0..9]	[593..856]
gi\|71670934, gi\|... - gi\|71676073\|ref\|ZP_00673816.1\| G-protein beta WD-40 repeat [Trichodesmium erythraeum IMS101], gi\|716...	574.0	[0..8]	[590..837]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSVGRSEVV VDDLFFDSSD VLSIGEQVVV EEEEVEEAEF QVWSGEPISV EERRVRFLKK  60
   61 MGLLEERCLE RMVSDYSDEV TSSSSDSSLC DSGLQC

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [97-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CVREENYGST TSISDEELEG VDDDDDDSEE ISSNASTSPS RSSSKKSAKK WLFNCFSAGV  60
   61 KDKDFKYKSS EETMSKVKVK TNKKSHVELS AAYMVQKING HKGKIWTLKF SPDGKYLATG 120
  121 GEDGVVKIWR IT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.0
Match:	1vyhC
Description:	PAF-AH Holoenzyme: Lis1/Alfa2
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [229-471]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSDSLLASFL RQQEPINQQA ALVLFPQKAF HIEETPFQEL YGHTGDVLDL AWSDSNLLLS  60
   61 ASKDKTVRLW RTGCDQCLHV FHHNNYVTCV EFNPVNKNNF ASGSIDGKAR IWGLSEERVV 120
  121 AWTDVRDSIS AISYQPNGNG FVVGCITGNC RFYQILDNDV IMDEQILIRG RNRITAVEFC 180
  181 PGSSEKILVS SEDSKVRIFD KTQMIHKFKA PSNFGRQSSA SFVSSTGKHI LSVRRGVGVY 240
  241 LWN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	6.19
Match:	2gnqA
Description:	No description for 2gnqA was found.

Predicted Domain #4

Region A:
Residues: [472-593]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDAFPSRKGA KSSRSFEYFH SPGVSAVAAW TQPETKVSKV AGDDEESRRV MRKIQSSGRL  60
   61 SRSCRVTATW PEEKLLMNVG SYDSNLPVGE FDLAEAWRLV IVTVSLDGMI RTFHNYGLPR 120
  121 TF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.522879
Match:	2gnqA
Description:	No description for 2gnqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits