YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|8979722, gi|1...
Organism: Arabidopsis thaliana
Length: 309 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|8979722, gi|1....

Description E-value Query
Range
Subject
Range
gi|46433496, gi|... - gi|77023056|ref|XP_888972.1| hypothetical protein CaO19_6701 [Candida albicans SC5314], gi|68488040|...
gi|76573785 - gi|76573785|dbj|BAE44869.1| hypothetical protein [Candida albicans]
304.0 [0..4] [309..388]

Back

Predicted Domain #1
Region A:
Residues: [1-309]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKETRLGIT AKKDEDFGKW YSEACRFGEL VEYYESVKGC YILKPSGISD EYLERYTNTT  60
   61 LKGLLQRLLG LQELVDKRTQ GPPFEAACMT HGDDKGLVFP PKVAPVQVVV IHVPIKGAAD 120
  121 YQELCDACEA VESTLLGAGI RAEADIRDNY SCGWKYADQE LTGVPLRIET GPRDLANDQV 180
  181 RIVTRDNGAK MDVKRGDLIE QVKDLLEKIQ SNLYDVAKRK VEECTQKVET WDEFVEALSQ 240
  241 KKLILAPWCD KVEVEKDVKR RTRGDETGGG GGGAKTLCTP LEQPELGEET LCFASGKPAK 300
  301 KWSYWGRSY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 73.09691
Match: 1h4qA
Description: Prolyl-tRNA synthetase (ProRS) domain; C-terminal domain of ProRS; Prolyl-tRNA synthetase (ProRS)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.372436499192166 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle