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View Structure Prediction Details

Protein: gi|11358066, gi|...
Organism: Arabidopsis thaliana
Length: 673 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11358066, gi|....

Description E-value Query
Range
Subject
Range
gi|50939471, gi|... - gi|50939471|ref|XP_479263.1| unknown protein [Oryza sativa (japonica cultivar-group)], gi|33146722|d...
429.0 [0..23] [653..2]
gi|9759465 - gi|9759465|dbj|BAB10381.1| unnamed protein product [Arabidopsis thaliana]
266.0 [0..20] [252..3]
gi|71834724 - gi|71834724|gb|AAZ41814.1| 80C09_3 [Brassica rapa subsp. pekinensis]
216.0 [0..7] [223..25]

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Predicted Domain #1
Region A:
Residues: [1-190]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNSASDGD FGTNSVPAEM AEAQYVRAKT SVWWDIENCQ VPNGLDAHGI AQNITSALQK  60
   61 MNYCGPVSIS AYGDTNRIPL TIQHALNSTG IALNHVPAGV KDASDKKILV DMLFWALDNP 120
  121 APANFMLISG DRDFSNALHG LRMRRYNVLL AQPLKASVPL VHAAKTVWLW TSLSAGGIPL 180
  181 TRAESLQLVA 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.33
Match: 2qipA
Description: No description for 2qipA was found.

Predicted Domain #2
Region A:
Residues: [191-378]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQTTPKPGSE IPSSQPLDSN SDSRRVFDNK SKVKYVPKPS NHQPNNNYRQ QQQNTQGKQF  60
   61 KKAPHEFFGT SEPSVSTSRP PPPNLPSSNV NTFPGNVMTN PQNQNQYTYP PRPGPFPPRQ 120
  121 PYPNTDPSWN NGNSIPNHAQ NYYPNAARPG AATMRPPYGN VFRPYRPENL NPPVGNGFRP 180
  181 MQHPRNDG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [379-526]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRFPSPPLLT PLDISNLSVS QYPSQTQNRP NFNPQVRQEF RPKMESSYTH NGPNKSYIPR  60
   61 CSSAPVTQST TTTAHTYPSS PGVPPSQPPM VTGSGSSNDR WGTQECPPPS EYVQGLIGVI 120
  121 LHALHILKTE KVMPTEPNIS DCIQYGDP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [527-673]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KHHGTDVKKA LESALEHHMI MMTNVGKLKL YIGKNEALWN CVNPLGANAK QYPKETWDRI  60
   61 QQFLTSSSGR VEFTATTCRY EAAQVLKKEC LKEFTLGDIL QILNITATTK KWITHHQTGW 120
  121 KPITISLAAE TTNETATEAD PGIQTVA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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