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View Structure Prediction Details

Protein: gi|20258971, gi|...
Organism: Arabidopsis thaliana
Length: 447 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20258971, gi|....

Description E-value Query
Range
Subject
Range
gi|42572353 - gi|42572353|ref|NP_974272.1| no apical meristem (NAM) family protein [Arabidopsis thaliana]
588.0 [0..1] [447..1]
gi|21105736 - gi|21105736|gb|AAM34767.1|AF509867_1 nam-like protein 4 [Petunia x hybrida]
448.0 [0..1] [439..1]
gi|255674164, gi... - gi|34902214|ref|NP_912453.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)], gi|27452...
382.0 [0..22] [421..1]

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Predicted Domain #1
Region A:
Residues: [1-182]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRESLAVVS SPPSATAPST AVSATSLAPG FRFHPTDEEL VSYYLKRKVL GKPVRFDAIG  60
   61 EVDIYKHEPW DLAVFSKLKT RDQEWYFFSA LDKKYGNGAR MNRATNKGYW KATGKDREIR 120
  121 RDIQLLGMKK TLVFHSGRAP DGLRTNWVMH EYRLVEYETE TNGSLLQDAY VLCRVFHKNN 180
  181 IG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 67.69897
Match: 1ut4A
Description: Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [183-279]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPSGNRYAPF MEEEWADGGG ALIPGIDVRV RVEALPQANG NNQMDQEMHS ASKDLININE  60
   61 LPRDATPMDI EPNQQNHHES AFKPQESNNH SGYEEDE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [280-364]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTLKREHAEE DERPPSLCIL NKEAPLPLLQ YKRRRQNESN NNSSRNTQDH CSSTITTVDN  60
   61 TTTLISSSAA AATNTAISAL LEFSL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [365-447]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGISDKKENQ QKEETSPPSP IASPEEKVND LQKEVHQMSV ERETFKLEMM SAEAMISILQ  60
   61 SRIDALRQEN EELKKKNASG QAS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle