YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|11280235, gi|...
Organism: Arabidopsis thaliana
Length: 415 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11280235, gi|....

Description E-value Query
Range
Subject
Range
HIS6B_ARATH, HIS... - Histidinol-phosphate aminotransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HISN6B PE=1 SV=1, ...
322.0 [0..1] [415..1]

Back

Predicted Domain #1
Region A:
Residues: [1-415]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVINVQGSP SFSIHSSESN LRKSRALKKP FCSIRNRVYC AQSSSAAVDE SKNITMGDSF  60
   61 IRPHLRQLAA YQPILPFEVL SAQLGRKPED IVKLDANENP YGPPPEATLG NMKFPYVYPD 120
  121 PQSRRLRDAL AQDSGLESEY ILVGCGADEL IDLIMRCVLD PGEKIIDCPP TFSMYVFDAA 180
  181 VNGAGVIKVP RNPDFSLNVD RIAEVVELEK PKCIFLTSPN NPDGSIISED DLLKILEMPI 240
  241 LVVLDEAYIE FSGVESRMKW VKKYENLIVL RTFSKRAGLA GLRVGYGAFP LSIIEYLWRA 300
  301 KQPYNVSVAG EVAALAALSN GKYLEDVRDA LVRERERLFG LLKEVPFLNP YPSYSNFILC 360
  361 EVTSGMDAKK LKEDLAKMGV MVRHYNSQEL KGYVRVSAGK PEHTDVLMEC LKQFY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.69897
Match: 1fg3A
Description: Histidinol-phosphate aminotransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
L-aspartate:2-oxoglutarate aminotransferase activity 5.03677961292867 bayes_pls_golite062009
catalytic activity 2.29878871754893 bayes_pls_golite062009
transferase activity 1.44093490824786 bayes_pls_golite062009
transferase activity, transferring nitrogenous groups 1.28316822767388 bayes_pls_golite062009
histidinol-phosphate transaminase activity 1.26617748508821 bayes_pls_golite062009
transaminase activity 1.24990480711889 bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity 1.05524734914785 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor 1.05524734914785 bayes_pls_golite062009
5-aminolevulinate synthase activity 0.802089219704558 bayes_pls_golite062009
intramolecular transferase activity, transferring amino groups 0.659071155545801 bayes_pls_golite062009
binding 0.536634592992536 bayes_pls_golite062009
pyridoxal phosphate binding 0.16957228630576 bayes_pls_golite062009
vitamin B6 binding 0.16957228630576 bayes_pls_golite062009
cystathionine beta-lyase activity 0.0833010353195099 bayes_pls_golite062009
nucleic acid binding 0.013097682076602 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle