YRC Public Data Repository - Protein Structure Prediction

Protein:	FABI_ARATH
Organism:	Arabidopsis thaliana
Length:	390 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FABI_ARATH.

Description	E-value	Query Range	Subject Range
gi\|53688164 - gi\|53688164\|ref\|ZP_00110036.2\| COG1028: Dehydrogenases with different specificities (related to shor...	280.0	[0..63]	[375..79]
gi\|2204087 - gi\|2204087\|emb\|CAA74175.1\| enoyl-ACP reductase [Arabidopsis thaliana]	276.0	[0..1]	[390..1]
gi\|146296617, gi... - gi\|82501013\|ref\|ZP_00886394.1\| 3-oxoacyl-(acyl-carrier-protein) reductase [Caldicellulosiruptor sacc...	275.0	[0..92]	[373..4]
FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima GN=fabG PE=3 SV=1 FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / D...	272.0	[0..90]	[373..1]
gi\|18310052, gi\|... - gi\|18310052\|ref\|NP_561986.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens st...	272.0	[0..92]	[373..2]
gi\|75908644, gi\|... - gi\|75908644\|ref\|YP_322940.1\| Short-chain dehydrogenase/reductase SDR [Anabaena variabilis ATCC 29413...	270.0	[0..63]	[375..9]
gi\|115250215, gi... - gi\|126698778\|ref\|YP_001087675.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile 6... gi\|255306086 - gi\|255306086\|ref\|ZP_05350258.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile AT... gi\|255100197 - gi\|255100197\|ref\|ZP_05329174.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC...	269.0	[0..90]	[373..2]
gi\|255313843 - gi\|255313843\|ref\|ZP_05355426.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255516524 - gi\|255516524\|ref\|ZP_05384200.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255649624 - gi\|255649624\|ref\|ZP_05396526.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|254974717 - gi\|254974717\|ref\|ZP_05271189.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255092105 - gi\|255092105\|ref\|ZP_05321583.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile CI... gi\|90575404, gi\|... - gi\|90575404\|ref\|ZP_01231888.1\| hypothetical protein CdifQ_02001165 [Clostridium difficile QCD-32g58]...	268.0	[0..90]	[373..2]
gi\|168210762, gi... - gi\|170711222\|gb\|EDT23404.1\| 3-oxoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens B st... gi\|110675446, gi... - gi\|110800799\|ref\|YP_695772.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens A... gi\|170660709, gi... - gi\|170660709\|gb\|EDT13392.1\| 3-oxoacyl- reductase [Clostridium perfringens E str. JGS1987], gi\|168207...	268.0	[0..92]	[373..2]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATAASSLQ IATRRPSMSS PSKILKAGTY IVGANPGNAS WDKLSCTRQL SNLGCLRNHS  60
   61 AVPTCKRPFS FSTRAMSESS ENKAPSGLP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.567	a.20.1	PGBD-like
View	Download	0.567	d.58.7	RNA-binding domain, RBD
View	Download	0.536	d.58.7	RNA-binding domain, RBD
View	Download	0.469	d.58.7	RNA-binding domain, RBD
View	Download	0.397	d.58.7	RNA-binding domain, RBD
View	Download	0.277	a.4.12	TrpR-like
View	Download	0.273	a.74.1	Cyclin-like

Predicted Domain #2

Region A:
Residues: [90-390]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IDLRGKRAFI AGIADDNGYG WAIAKSLAAA GAEILVGTWV PALNIFETSL RRGKFDQSRV  60
   61 LPDGSLMEIK KVYALDAVFD NPEDVPEDVK TNKRYAGSSN WTVQEAAECV KKDFGSIDIL 120
  121 VHSLANGPEV SKPLLETSRK GYLAAISASS YSFVSLLRHF LPIMNPGGAS ISLTYIASER 180
  181 IIPGYGGGMS SAKAALESDT RVLAYEAGRK SNIRVNTISA GPLGSRAAKA IGFIDTMIEY 240
  241 SYNNGPIQKT LTADEVGNAA AFLASPLASA ITGATIYVDN GLNAMGVALD SPVFKDLNSK 300
  301 N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.0
Match:	1enoA
Description:	BRASSICA NAPUS ENOYL ACP REDUCTASE/NAD BINARY COMPLEX AT PH 8.0 AND ROOM TEMPERATURE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits