| Protein: | gi|25350651, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 1056 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25350651, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
789.0 | [0..11] | [1056..25] |
|
Region A: Residues: [1-126] |
1 11 21 31 41 51
| | | | | |
1 MSKIKPLSKS SQDLSLLTSD IASFASSIGL ASALPSSGFN DTDFRKPAKS KTQKRKKPKK 60
61 DQQHKDEDEE GEPKSNIGNE KGKDFGARKQ NKDAPVKQTL QPKPKPGFLS IDDESTGYKK 120
121 KRFDEF
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [127-709] |
1 11 21 31 41 51
| | | | | |
1 KSLPKLPLVK ASLLSSEWYN DAAEFEEKVF GGRKVAVANK EDFKGVVEKK RELGERLMWQ 60
61 YAEDFATSKG KGGDMKMVIS AQKSGTVADK ITAFEIMVGE NPIANMRSLD ALLGMVTSKV 120
121 GKRFAFKGLK ALSEILIRHI FLTHTMSYGF MLLPDRKLKS LLQRPLNIIP ENKDGYSLLL 180
181 FWYWEDCLKQ RYERFVTALD ESSKDMLPEL KDKALKTIYF MLTSKSEQER KLLVSLVNKL 240
241 GDPQNKSASN ADYHLTNLLA DHPNMKAVVI DEVDSFLFRP HLGLRAKYHA VNFLSQIRLS 300
301 HKGEDPKVAK RLIDVYFALF KVLTTEANRK QGADDKGAAD KKKSNPKDTK QEVSTDSPIE 360
361 LDSRILSALL TGVNRAFPYV STDEADDIIE SQTPVLFKLV HSANFNVGVQ SLMLLDKISS 420
421 KNKIVSDRFY RALYSKLLLP SAMNSSKAEM FIGLLLRAMK NDINIKRVAA FSKRVLQVAL 480
481 QQPPQYACGC LFLLSEVLKS RPPLWKMVVQ RESVEEEEDI EHFEDVIEGD DVDPNKKAEN 540
541 DENVVEVDHD GVEKSSRDGD SSSDDEEALA IRLSDEEDDN ASD
|
| Detection Method: | |
| Confidence: | 1.05 |
| Match: | 1gw5B |
| Description: | Adaptin beta subunit N-terminal fragment |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.267627928716605 | bayes_pls_golite062009 |
|
Region A: Residues: [710-789] |
1 11 21 31 41 51
| | | | | |
1 DSEELIRNET PQLEEVMEVS NDMEKRSQPP MRPSSLPGGY DPRHREPSYC NADRASWWEL 60
61 GVLSKHAHPS VATMAGTLLS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.211 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
|
Region A: Residues: [790-1056] |
1 11 21 31 41 51
| | | | | |
1 GTNIVYNGNP LNDLSLTAFL DKFMEKKPKQ NTWHGGSQIE PSKKLDMSNR VIGAEILSLA 60
61 EGDVAPEDLV FHKFYVNKMT STKQSKKKKK KKLPEEEAAE ELYDVNDGDG GENYDSDVEF 120
121 EAGDESDNEE IENMLDDVDD NAVEEEGGEY DYDDLDGVAG EDDEELVADV SDAEMDTDMD 180
181 MDLIDDEDDN NVDDDGTGDG GDDDSDGDDG RSKKKKKEKR KRKSPFASLE EYKHLIDQDE 240
241 KEDSKTKRKA TSEPTKKKKK KKSKASE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
