| Protein: | gi|15228453, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 1752 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15228453, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
1845.0 | [0..2] | [1751..3] |
|
Region A: Residues: [1-305] |
1 11 21 31 41 51
| | | | | |
1 MKNKQDSSSP ETNIDSNPSK RTRFQSIETP QSQITHSTTA DTNATVPLTS AFSRVFKDIT 60
61 NLGYSSVGSF LTPSNNQQSY SAKKTHSTNI GSTVVSGLAS MVQANSRHMK QSQAVVFKDM 120
121 TNLPSMGLSS ATGKGKASQN ESTTSCMFFH KQTTLQTEKD RFPRKNLQND FENAFHSPIT 180
181 QGQSSATINN DFHCEMSDDE SMPDFNYDSS STNATDEDQH YYLSPTEDDT DDESTISIPV 240
241 ADPSSDICQN NANPTEPTTP HIAKCAEHEK FIATLKKTAA KAAANPNLPQ PKKRGRPRLN 300
301 KDTTN
|
| Detection Method: |  |
| Confidence: | 1.37 |
| Match: | 1h1kI |
| Description: | THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [306-398] |
1 11 21 31 41 51
| | | | | |
1 SAETATKSAY LDHGDATYKC NYCGALMWFA ERINKKQQNK SPTFTLCCGK GNVKLPLLKD 60
61 SPALINNLLT GDDALSRNFR ENIRIYNMIF AMT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [399-596] |
1 11 21 31 41 51
| | | | | |
1 SLGGRVDNSM PKGKGPNMFR LQGGNYHLIG SLKPNPGDYA KYSQLYIVDT ENEVDNRATV 60
61 INKGKGRRNT PAKQKLKKEV IEALIEMLNK VNPYVDKFRQ ARERIQDDND EPFHMRIVAD 120
121 RKGVDRRTYS MPTSSEVAAL IPGGFQPSMF DRDIVLEEKT TGHLTRISQI HISYLALQYP 180
181 LILCYGEDGY TPGIEKCL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [597-696] |
1 11 21 31 41 51
| | | | | |
1 PNSAKKKKKK CISMRQWFAF RIQERPNECK TLTRSKRLFQ QFLCDAYTTI ESNRLSYIKF 60
61 KQSKLRCENY NSLKKASEAG TTSMNEEGNQ VLIPSSLTGG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [697-881] |
1 11 21 31 41 51
| | | | | |
1 PRYMVQNYYD AMAICKHYGF PDLFITFTCN PKWPEITRHC QARGLSVDDR PDIVARIFKI 60
61 KLDSLMKDLT DGKMLGKTVA SMHTVEFQKR GLPHAHILLF MDAKSKLPTA DDIDKIISAE 120
121 IPDKDKEPEL YEVIKNSMIH GPCGAANMNS PCMVEGKCSK QYPKKHQDIT KVGKDGYPIY 180
181 RRRMT
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [882-953] |
1 11 21 31 41 51
| | | | | |
1 EDYIEKGGFK CDNGYVVPYN KKLSLRYQAH INVEWCNQSG SIKYLFKYIN KGADRVVFIV 60
61 EPVNQDKTTE NA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [954-1076] |
1 11 21 31 41 51
| | | | | |
1 TSGEPPNSTE KKKDEIKDWF DCRYVSASEA VWRIYKFPLQ DRSTAVQRLS FHDEGKQPVY 60
61 AKPDADIEDV LERISNEDSM FMAWLTLNKN NDVGKNGKRA RELLYSQIPA YFTWDGKNKQ 120
121 WVK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1077-1196] |
1 11 21 31 41 51
| | | | | |
1 RIRGFSLGRI NYVCRKMEVE YYLRVLLNIV KGPMSYDDIK TFNGVVYPSF KEACFARGIL 60
61 DDDQVYIDGL HEASQFCFGD YLRNFFAMLL LSDSLARPEH VWSETWHLLA EDIENKKRED 120
121
|
| Detection Method: | |
| Confidence: | 82.69897 |
| Match: | 1qvrA |
| Description: | Crystal Structure Analysis of ClpB |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1197-1752] |
1 11 21 31 41 51
| | | | | |
1 FKNPDLKLTL AEIRNYTLQE IEKIMLRNGA TLKEIQDFPQ PSREGIDNSN RLVVDELRYN 60
61 IDSNLKEKHD EWFQMLNTEQ RGIYDEITGA VFNDLGGVFF IYGFGGTGKT FIWKTLAAAV 120
121 RSRGQIVLNV ASSGIASLLL EGGRTAHSRF AIPLNPDEFS VCKITPKSDL ANLIKEASLI 180
181 IWDEAPMMSK FCFESLDKSF YDILNNKDNK VFGGKVVVFG GDFRQVLPVI NGAGRVEIVM 240
241 SSLNASYLWD HCKVLKLTKN MRLLSGGLSS EEAKEIQQFS DWLLAVGDGR INEPNDGEAL 300
301 IDIPEELLIK EAGNPIEAIS KEIYGDPSEL HMINDPKFFQ RRAILAPTNE DVNTINQYML 360
361 EHLKSEERIY LSADSIDPTD SDSLANPVIT PDFLNSIQLT GMPHHALRLK VGAPVMLLRN 420
421 LDPKGGLCNG TRLQITQLAK QVVQAKVITR DRIGDIVLIP LINLTPSDTK LPFKMRRRQF 480
481 PLSVAFAMTI NKSQGQSLEQ VGLYLPKPVF SHGQLYVALS RVTSKKGLKI LILDKDGNMQ 540
541 KQTTNVVFKE VFQNIV
|
| Detection Method: | |
| Confidence: | 30.154902 |
| Match: | 1w36D |
| Description: | RecBCD:DNA complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| catalytic activity | 0.470983068319171 | bayes_pls_golite062009 |
| hydrolase activity | 0.0582794297634999 | bayes_pls_golite062009 |
