| Protein: | gi|7594553, gi|1... |
| Organism: | Arabidopsis thaliana |
| Length: | 1531 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7594553, gi|1....
| Description | E-value | Query Range |
Subject Range |
|
|
885.0 | [0..37] | [1524..25] |
|
Region A: Residues: [1-562] |
1 11 21 31 41 51
| | | | | |
1 MHSSLEPEKM EEGGGSNSLK RKFSEIDGDQ NLDSVSSPMM TDSNGSYELK VYEVAKNRNI 60
61 IAVLGTGIDK SEITKRLIKA MGSSDTDKRL IIFLAPTVNL QCCEIRALVN LKVEEYFGAK 120
121 GVDKWTSQRW DEEFSKHDVL VMTPQILLDV LRSAFLKLEM VCLLIIDECH HTTGNHPYAK 180
181 LMKIFNPEER EGVEKFATTV KEGPILYNPS PSCSLELKEK LETSHLKFDA SLRRLQELGK 240
241 DSFLNMDNKF ETYQKRLSID YREILHCLDN LGLICAHLAA EVCLEKISDT KEESETYKEC 300
301 SMVCKEFLED ILSTIGVYLP QDDKSLVDLQ QNHLSAVISG HVSPKLKELF HLLDSFRGDK 360
361 QKQCLILVER IITAKVIERF VKKEASLAYL NVLYLTENNP STNVSAQKMQ IEIPDLFQHG 420
421 KVNLLFITDV VEEGFQVPDC SCMVCFDLPK TMCSYSQSQK HAKQSNSKSI MFLERGNPKQ 480
481 RDHLHDLMRR EVLIQDPEAP NLKSCPPPVK NGHGVKEIGS MVIPDSNITV SEEAASTQTM 540
541 SDPPSRNEQL PPCKKLRLDN NL
|
| Detection Method: |  |
| Confidence: | 33.154902 |
| Match: | 1z3iX |
| Description: | Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| catalytic activity | 1.37148167194523 | bayes_pls_golite062009 |
| binding | 0.712909626033412 | bayes_pls_golite062009 |
| hydrolase activity | 0.42374852534029 | bayes_pls_golite062009 |
|
Region A: Residues: [563-608] |
1 11 21 31 41 51
| | | | | |
1 LQSNGKEKVA SSKSKSSSSA AGSKKRKELH GTTCANALSG TWGENI
|
| Detection Method: | |
| Confidence: | 35.522879 |
| Match: | 1oywA |
| Description: | Structure of the RecQ Catalytic Core |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [609-733] |
1 11 21 31 41 51
| | | | | |
1 DGATFQAYKF DFCCNISGEV YSSFSLLLES TLAEDVGKVE MDLYLVRKLV KASVSPCGQI 60
61 RLSQEELVKA KYFQQFFFNG MFGKLFVGSK SQGTKREFLL QTDTSSLWHP AFMFLLLPVE 120
121 TNDLA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [734-1056] |
1 11 21 31 41 51
| | | | | |
1 SSATIDWSAI NSCASIVEFL KKNSLLDLRD SDGNQCNTSS GQEVLLDDKM EETNLIHFAN 60
61 ASSDKNSLEE LVVIAIHTGR IYSIVEAVSD SSAMSPFEVD ASSGYATYAE YFNKKYGIVL 120
121 AHPNQPLMKL KQSHHAHNLL VDFNEEMVVK TEPKAGNVRK RKPNIHAHLP PELLARIDVP 180
181 RAVLKSIYLL PSVMHRLESL MLASQLREEI DCSIDNFSIS STSILEAVTT LTCPESFSME 240
241 RLELLGDSVL KYVASCHLFL KYPDKDEGQL SRQRQSIISN SNLHRLTTSR KLQGYIRNGA 300
301 FEPRRWTAPG QFSLFPVPCK CGI
|
| Detection Method: | |
| Confidence: | 45.39794 |
| Match: | 2fflA |
| Description: | Crystal Structure of Dicer from Giardia intestinalis |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1057-1143] |
1 11 21 31 41 51
| | | | | |
1 DTREVPLDPK FFTENMTIKI GKSCDMGHRW VVSKSVSDCA EALIGAYYVS GGLSASLHMM 60
61 KWLGIDVDFD PNLVVEAINR VSLRCYI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1144-1383] |
1 11 21 31 41 51
| | | | | |
1 PKEDELIELE RKIQHEFSAK FLLKEAITHS SLRESYSYER LEFLGDSVLD FLITRHLFNT 60
61 YEQTGPGEMT DLRSACVNNE NFAQVAVKNN LHTHLQRCAT VLETQINDYL MSFQKPDETG 120
121 RSIPSIQGPK ALGDVVESIA GALLIDTRLD LDQVWRVFEP LLSPLVTPDK LQLPPYRELN 180
181 ELCDSLGYFF RVKCSNDGVK AQATIQLQLD DVLLTGDGSE QTNKLALGKA ASHLLTQLEK 240
241
|
| Detection Method: | |
| Confidence: | 51.0 |
| Match: | 1o0wA |
| Description: | RNase III endonuclease catalytic domain; RNase III, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 2.103878681691 | bayes_pls_golite062009 |
| endoribonuclease activity | 2.02847548000256 | bayes_pls_golite062009 |
| endonuclease activity | 1.52328576888271 | bayes_pls_golite062009 |
| binding | 1.36306903445995 | bayes_pls_golite062009 |
| nucleic acid binding | 1.33734225890407 | bayes_pls_golite062009 |
| double-stranded RNA binding | 0.80785216315429 | bayes_pls_golite062009 |
| catalytic activity | 0.328884095744829 | bayes_pls_golite062009 |
| protein binding | 0.018276859224266 | bayes_pls_golite062009 |
|
Region A: Residues: [1384-1531] |
1 11 21 31 41 51
| | | | | |
1 RNISRKTSLG DNQSSMDVNL ACNHSDRETL TSETTEIQSI VIPFIGPINM KKGGPRGTLH 60
61 EFCKKHLWPM PTFDTSEEKS RTPFEFIDGG EKRTSFSSFT STITLRIPNR EAVMYAGEAR 120
121 PDKKSSFDSA VVELLYELER RKIVIIQK
|
| Detection Method: | |
| Confidence: | 13.045757 |
| Match: | 1qu6A |
| Description: | dsRNA-dependent protein kinase pkr |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 2.103878681691 | bayes_pls_golite062009 |
| binding | 1.36306903445995 | bayes_pls_golite062009 |
| nucleic acid binding | 1.33734225890407 | bayes_pls_golite062009 |
| double-stranded RNA binding | 0.80785216315429 | bayes_pls_golite062009 |
| catalytic activity | 0.328884095744829 | bayes_pls_golite062009 |
| protein binding | 0.018276859224266 | bayes_pls_golite062009 |
