YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|15232611, gi|...
Organism: Arabidopsis thaliana
Length: 477 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15232611, gi|....

Description E-value Query
Range
Subject
Range
gi|50928731, gi|... - gi|50928731|ref|XP_473893.1| OSJNBa0093O08.1 [Oryza sativa (japonica cultivar-group)], gi|38345599|e...
274.0 [0..2] [315..659]

Back

Predicted Domain #1
Region A:
Residues: [1-320]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIERTNLIVL AADNKEEDEG STCPNFLEFS LEQLRVATDG FSADNIVSEH NERVPNIVYK  60
   61 GQLNDGRKIA VKRFQRLSWP DSLEFIEEAQ AVGRCRSEHM ANLIGCCSEG HERLLVAEYM 120
  121 PNETLAKHLF HWEKRPMKWE MRLRVALHTA TALEYCNDWG IDLYHDLNTY RILFDKVGNP 180
  181 RLSCFGLMKC SREGKSYSTN LAFAPPEYLR LGTVIPESVT FSFGTLLLDL MSGRHIPPNH 240
  241 ALDLFRGKNY LVLMDSALDG QFSDEDRTEL IHLASRCLRP EPDERPSIKF LMSALSRLEK 300
  301 RAELWPNVKE ENIPTPSYTE 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.522879
Match: 2qkwB
Description: No description for 2qkwB was found.

Predicted Domain #2
Region A:
Residues: [321-477]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PATKEPLPLT PFGEACWRVD LSGMHELLEK LGYGEDDVVV TNEFSFQMWT GQMQENMDYK  60
   61 KHGDAAFRAK DFETAIEFYT EFMSGAPVVS PTVLARRCLC YLMSDMFREA LSDAMQTQVA 120
  121 SPEFSIALYL QAACLLKLGM EAEAKEALRH GSSLEAF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.69897
Match: 2fo7A
Description: Crystal structure of an 8 repeat consensus TPR superhelix (trigonal crystal form)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle