YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PAP4_ARATH
Organism: Arabidopsis thaliana
Length: 242 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAP4_ARATH.

Description E-value Query
Range
Subject
Range
PAP5_ARATH - Probable plastid-lipid-associated protein 5, chloroplastic OS=Arabidopsis thaliana GN=PAP5 PE=2 SV=1
289.0 [0..1] [242..1]
gi|92868144, gi|... - gi|92868144|gb|ABE78230.1| PAP fibrillin [Medicago truncatula], gi|124360438|gb|ABN08448.1| PAP fibr...
244.0 [0..10] [242..6]
gi|41469444, gi|... - gi|50918107|ref|XP_469450.1| putative PAP_fibrillin [Oryza sativa (japonica cultivar-group)], gi|41...
231.0 [0..47] [242..62]
gi|83743301 - gi|83743301|gb|ABC42191.1| plastid lipid associated protein CHRC [Lycopersicon esculentum]
204.0 [0..11] [233..28]
gi|14248550 - gi|14248550|gb|AAK57562.1| plastid-lipid associated protein PAP2 [Brassica rapa]
gi|14248550|gb|A... - plastid-lipid associated protein PAP2 [Brassica rapa]
203.0 [0..7] [233..26]

Back

Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALPSCLKTG ALMSPATGFN FSGSLMKSDS GFAVPTKLQS TRKGDRERLR VQAIFSFPPA  60
   61 FLTRNGRAEK QKQLKQELLE 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [81-242]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AIEPLERGAT ASPDDQLRID QLARKVEAVN PTKEPLKSDL VNGKWELIYT TSASILQAKK  60
   61 PRFLRSITNY QSINVDTLKV QNMETWPFYN SVTGDIKPLN SKKVAVKLQV FKILGFIPIK 120
  121 APDSARGELE ITYVDEELRL SRGDKGNLFI LKMFDPTYRI PL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.976
Match: 1z24A
Description: The molecular structure of insecticyanin from the tobacco hornworm Manduca sexta L. at 2.6 A resolution.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle