YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: VDAC4_ARATH
Organism: Arabidopsis thaliana
Length: 274 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VDAC4_ARATH.

Description E-value Query
Range
Subject
Range
gi|5031279 - gi|5031279|gb|AAD38145.1|AF139498_1 porin [Prunus armeniaca]
328.0 [0..1] [274..1]

Back

Predicted Domain #1
Region A:
Residues: [1-98]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSPAPFAD IGKKAKDLLN KDYIFDHKFT LTMLSATGTE FVATGLKKDD FFFGDISTLY  60
   61 KGQNTIVDLK IDSHSSVSTK VTLKNLLPSA KAVISFKI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.850 N/A N/A b.1.6 Cadherin

Predicted Domain #2
Region A:
Residues: [99-274]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDHKSGKLDV QYVHPHATLN SSIGLNPTPL LDLSATIGSQ NVCLGGEVSF DTASSSLTKY  60
   61 NAGIGFNNQG VSAALILEDK GESLRATYVH TVNPTTSFGA ELIRRFSNYN NSFTVGSSHS 120
  121 VDQFTVVKTR FSNSGKAGMV VQREWRPKSH ITFSAEYDSK AVTSSPKLGL ALALKP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle