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View Structure Prediction Details

Protein: VDAC4_ARATH
Organism: Arabidopsis thaliana
Length: 274 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VDAC4_ARATH.

Description E-value Query
Range
Subject
Range
gi|5031279 - gi|5031279|gb|AAD38145.1|AF139498_1 porin [Prunus armeniaca]
328.0 [0..1] [274..1]

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Predicted Domain #1
Region A:
Residues: [1-98]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSPAPFAD IGKKAKDLLN KDYIFDHKFT LTMLSATGTE FVATGLKKDD FFFGDISTLY  60
   61 KGQNTIVDLK IDSHSSVSTK VTLKNLLPSA KAVISFKI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.850 N/A N/A b.1.6 Cadherin
View Download 0.846 N/A N/A b.2.5 p53-like transcription factors
View Download 0.817 N/A N/A b.71.1 Glycosyl hydrolase domain
View Download 0.777 N/A N/A b.1.17 Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)
View Download 0.762 N/A N/A b.1.1 Immunoglobulin

Predicted Domain #2
Region A:
Residues: [99-274]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDHKSGKLDV QYVHPHATLN SSIGLNPTPL LDLSATIGSQ NVCLGGEVSF DTASSSLTKY  60
   61 NAGIGFNNQG VSAALILEDK GESLRATYVH TVNPTTSFGA ELIRRFSNYN NSFTVGSSHS 120
  121 VDQFTVVKTR FSNSGKAGMV VQREWRPKSH ITFSAEYDSK AVTSSPKLGL ALALKP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle