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View Structure Prediction Details

Protein: HDA17_ARATH
Organism: Arabidopsis thaliana
Length: 158 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HDA17_ARATH.

Description E-value Query
Range
Subject
Range
gi|11278171, gi|... - gi|6967116|emb|CAB72470.1| putative protein [Arabidopsis thaliana], pir||T47443 hypothetical protein...
273.0 [0..3] [158..264]

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Predicted Domain #1
Region A:
Residues: [1-158]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFSMLFTGH AECVKFVKKF NLPLLVTGGG GYTKENVARC WTVETGILLD TELPNEISEN  60
   61 DYIKYFAPDF SLKIPGGHIE NLNTKSYISS IKVQILENLR YIQHAPSVQM QEVPPDFYIP 120
  121 DFDEDEQNPD VRVDQRSRDK QIQRDDEYFD GDNDNDAS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.522879
Match: 1t64A
Description: Crystal Structure of human HDAC8 complexed with Trichostatin A
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle