YRC Public Data Repository - Protein Structure Prediction

Protein:	MINE1_ARATH
Organism:	Arabidopsis thaliana
Length:	229 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MINE1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|162461824, gi... - gi\|40217512\|dbj\|BAD05165.1\| MinE [Zea mays], gi\|162461824\|ref\|NP_001104870.1\| minE protein [Zea mays...	314.0	[0..1]	[228..1]
gi\|71089833 - gi\|71089833\|gb\|AAZ23773.1\| plastid division regulator MinE [Brassica napus]	260.0	[0..1]	[229..1]
gi\|47118332, gi\|... - gi\|47118332\|gb\|AAT11260.1\| putative cell division topological specificity factor [Oryza sativa (japo...	235.0	[0..1]	[228..1]
gi\|71089835 - gi\|71089835\|gb\|AAZ23774.1\| plastid division regulator MinE [Hordeum vulgare]	210.0	[0..2]	[228..6]
gi\|71089837 - gi\|71089837\|gb\|AAZ23775.1\| plastid division regulator MinE [Glycine max]	209.0	[0..1]	[229..1]
gi\|4775296 - gi\|4775296\|emb\|CAB42593.1\| putative MINE protein [Auxenochlorella protothecoides]	121.0	[0..100]	[207..69]
MINE_PECAS - Cell division topological specificity factor OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC... MINE_ERWCT - Cell division topological specificity factor OS=Erwinia carotovora subsp. atroseptica GN=minE PE=3 S...	118.0	[0..110]	[202..1]
gi\|205350611, gi... - gi\|205350611\|gb\|EDZ37242.1\| cell division topological specificity factor MinE [Salmonella enterica s... gi\|168462692, gi... - gi\|195634450\|gb\|EDX52802.1\| cell division topological specificity factor MinE [Salmonella enterica s... gi\|168820565, gi... - gi\|205342772\|gb\|EDZ29536.1\| cell division topological specificity factor MinE [Salmonella enterica s... MINE_SALNS - Cell division topological specificity factor OS=Salmonella newport (strain SL254) GN=minE PE=3 SV=1 gi\|167993268, gi... - gi\|205328653\|gb\|EDZ15417.1\| cell division topological specificity factor MinE [Salmonella enterica s... gi\|205331758, gi... - gi\|205331758\|gb\|EDZ18522.1\| cell division topological specificity factor MinE [Salmonella enterica s... gi\|197289206, gi... - gi\|197289206\|gb\|EDY28573.1\| cell division topological specificity factor MinE [Salmonella enterica s... gi\|205339227, gi... - gi\|205339227\|gb\|EDZ25991.1\| cell division topological specificity factor MinE [Salmonella enterica s... MINE_SALCH - Cell division topological specificity factor OS=Salmonella choleraesuis GN=minE PE=3 SV=1 MINE_SALCH - Cell division topological specificity factor OS=Salmonella choleraesuis (strain SC-B67) GN=minE PE=3... MINE_SALPA - Cell division topological specificity factor OS=Salmonella paratyphi A GN=minE PE=3 SV=1 MINE_SALPA - Cell division topological specificity factor OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) G... gi\|213580025 - gi\|213580025\|ref\|ZP_03361851.1\| cell division topological specificity factor MinE [Salmonella enteri... MINE_SALTI - Cell division topological specificity factor OS=Salmonella typhi GN=minE PE=3 SV=1 gi\|213609542 - gi\|213609542\|ref\|ZP_03369368.1\| cell division topological specificity factor MinE [Salmonella enteri... MINE_SALTY - Cell division topological specificity factor OS=Salmonella typhimurium GN=minE PE=3 SV=1 gi\|214002609 - gi\|214002609\|ref\|ZP_03413344.1\| cell division topological specificity factor MinE [Salmonella enteri... MINE_SALPC - Cell division topological specificity factor OS=Salmonella paratyphi C (strain RKS4594) GN=minE PE=3... lcl\|NC_016856.1_... - [gene=minE] [protein=cell division topological specificity factor MinE] [protein_id=YP_005237754.1] ... MINE_SALG2 - Cell division topological specificity factor OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) G... MINE_SALEP - Cell division topological specificity factor OS=Salmonella enteritidis PT4 (strain P125109) GN=minE ... gi\|213052595 - gi\|213052595\|ref\|ZP_03345473.1\| cell division topological specificity factor MinE [Salmonella enteri... gi\|213426610 - gi\|213426610\|ref\|ZP_03359360.1\| cell division topological specificity factor MinE [Salmonella enteri... gi\|197262920, gi... - gi\|197262920\|ref\|ZP_03162994.1\| cell division topological specificity factor MinE [Salmonella enteri... MINE_SALPB - Cell division topological specificity factor OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)... MINE_SALPK - Cell division topological specificity factor OS=Salmonella paratyphi A (strain AKU_12601) GN=minE PE... MINE_SALAR - Cell division topological specificity factor OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86... MINE_SALDC - Cell division topological specificity factor OS=Salmonella dublin (strain CT_02021853) GN=minE PE=3 ... gi\|200390793, gi... - gi\|200390793\|ref\|ZP_03217404.1\| cell division topological specificity factor MinE [Salmonella enteri... MINE_SALHS - Cell division topological specificity factor OS=Salmonella heidelberg (strain SL476) GN=minE PE=3 SV... gi\|194469036, gi... - gi\|194469036\|ref\|ZP_03075020.1\| cell division topological specificity factor MinE [Salmonella enteri... MINE_SALSV - Cell division topological specificity factor OS=Salmonella schwarzengrund (strain CVM19633) GN=minE ... MINE_SALCH - Cell division topological specificity factor OS=Salmonella choleraesuis GN=minE PE=3 SV=1 MINE_SALPB - Cell division topological specificity factor OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)... MINE_SALA4 - Cell division topological specificity factor OS=Salmonella agona (strain SL483) GN=minE PE=3 SV=1 MINE_SALTY - Cell division topological specificity factor OS=Salmonella typhimurium GN=minE PE=3 SV=1 gi\|238912119 - gi\|238912119\|ref\|ZP_04655956.1\| cell division topological specificity factor MinE [Salmonella enteri... gi\|227333438, gi... - gi\|228555198\|gb\|EEK19863.1\| hypothetical protein CIT292_03020 [Citrobacter youngae ATCC 29220], gi\|2... gi\|283785538\|ref... - Cell division topological specificity factor [Citrobacter rodentium ICC168] MINE_SALTI - Cell division topological specificity factor OS=Salmonella typhi GN=minE PE=3 SV=1 MINE_SALTY - Cell division topological specificity factor OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC... gi\|29141536, gi\|... - gi\|29141536\|ref\|NP_804878.1\| cell division topological specificity factor MinE [Salmonella enterica ... gi\|16760706 - gi\|16760706\|ref\|NP_456323.1\| cell division topological specificity factor MinE [Salmonella enterica ...	115.0	[0..110]	[201..1]
MINE_SYNP6 - Cell division topological specificity factor OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SA... MINE_SYNE7 - Cell division topological specificity factor OS=Synechococcus elongatus (strain PCC 7942) GN=minE PE...	115.0	[0..112]	[199..5]
gi\|30062691, gi\|... - gi\|30062691\|ref\|NP_836862.1\| cell division topological specificity factor MinE [Shigella flexneri 2a... MINE_ECO57 - Cell division topological specificity factor OS=Escherichia coli O157:H7 GN=minE PE=3 SV=1 EG10598 - cell division topological specificity factor / Blocks MinCD inhibition of FtsZ polymerization at cel... EG10598 - cell division topological specificity factor / Blocks MinCD inhibition of FtsZ polymerization at cel... gi\|73671289\|gb\|A... - MinE [Escherichia coli] gi\|15801396, gi\|... - gi\|15801396\|ref\|NP_287413.1\| cell division topological specificity factor MinE [Escherichia coli O15... MINE_ECOL6 - Cell division topological specificity factor OS=Escherichia coli O6 GN=minE PE=3 SV=1 MINE_ECOLI - Cell division topological specificity factor - Escherichia coli gi\|227836619, gi... - gi\|227886415\|ref\|ZP_04004220.1\| cell division topological specificity factor MinE [Escherichia coli ... gi\|237705126, gi... - gi\|237705126\|ref\|ZP_04535607.1\| cell division topological specificity factor MinE [Escherichia sp. 3... gi\|187766766, gi... - gi\|187766766\|gb\|EDU30610.1\| cell division topological specificity factor MinE [Escherichia coli O157... gi\|189356333, gi... - gi\|189356333\|gb\|EDU74752.1\| cell division topological specificity factor MinE [Escherichia coli O157... gi\|189372420, gi... - gi\|189372420\|gb\|EDU90836.1\| cell division topological specificity factor MinE [Escherichia coli O157... gi\|188999951, gi... - gi\|188999951\|gb\|EDU68937.1\| cell division topological specificity factor MinE [Escherichia coli O157... MINE_ECOSM - Cell division topological specificity factor OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=minE PE... MINE_ECODH - Cell division topological specificity factor OS=Escherichia coli (strain K12 / DH10B) GN=minE PE=3 S... gi\|217318601, gi... - gi\|217328174\|ref\|ZP_03444256.1\| cell division topological specificity factor MinE [Escherichia coli ... MINE_ECO27 - Cell division topological specificity factor OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN... MINE_ECO45 - Cell division topological specificity factor OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=minE... MINE_ECO8A - Cell division topological specificity factor OS=Escherichia coli O8 (strain IAI1) GN=minE PE=3 SV=1 MINE_ECO55 - Cell division topological specificity factor OS=Escherichia coli (strain 55989 / EAEC) GN=minE PE=3 ... MINE_ECO81 - Cell division topological specificity factor OS=Escherichia coli O81 (strain ED1a) GN=minE PE=3 SV=1 MINE_ECOLU - Cell division topological specificity factor OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)... MINE_ECO7I - Cell division topological specificity factor OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=min... MINE_SHIBS - Cell division topological specificity factor OS=Shigella boydii serotype 4 (strain Sb227) GN=minE PE... gi\|194416943, gi... - gi\|194434828\|ref\|ZP_03067077.1\| cell division topological specificity factor MinE [Shigella dysenter... MINE_ECOK1 - Cell division topological specificity factor OS=Escherichia coli O1:K1 / APEC GN=minE PE=3 SV=1 gi\|170122860, gi... - gi\|170768094\|ref\|ZP_02902547.1\| cell division topological specificity factor MinE [Escherichia alber... MINE_SHISS - Cell division topological specificity factor OS=Shigella sonnei (strain Ss046) GN=minE PE=3 SV=1 gi\|124498084, gi... - gi\|124532299\|ref\|ZP_01702193.1\| cell division topological specificity factor MinE [Escherichia coli ... gi\|208806085, gi... - gi\|208806085\|ref\|ZP_03248422.1\| cell division topological specificity factor MinE [Escherichia coli ... MINE_SHIDS - Cell division topological specificity factor OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=mi... gi\|195938827 - gi\|195938827\|ref\|ZP_03084209.1\| cell division topological specificity factor MinE [Escherichia coli ... gi\|208822719, gi... - gi\|208822719\|ref\|ZP_03263038.1\| cell division topological specificity factor MinE [Escherichia coli ... gi\|208732686, gi... - gi\|208816038\|ref\|ZP_03257217.1\| cell division topological specificity factor MinE [Escherichia coli ... MINE_ECOLC - Cell division topological specificity factor OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Croo... MINE_ECOSE - Cell division topological specificity factor OS=Escherichia coli (strain SE11) GN=minE PE=3 SV=1 MINE_ECO5E - Cell division topological specificity factor OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=m... gi\|75209224, gi\|... - gi\|75209224\|ref\|ZP_00709471.1\| COG0851: Septum formation topological specificity factor [Escherichia... MINE_ECOBW - Cell division topological specificity factor OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=m... gi\|193071663, gi... - gi\|75214765\|ref\|ZP_00713260.1\| COG0851: Septum formation topological specificity factor [Escherichia... gi\|251784682, gi... - gi\|251784682\|ref\|YP_002998986.1\| hypothetical protein B21_01159 [Escherichia coli BL21], gi\|24237695... MINE_ECO24 - Cell division topological specificity factor OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN... gi\|253324871, gi... - gi\|254288065\|ref\|YP_003053813.1\| cell division topological specificity factor MinE [Escherichia coli... MINE_ECOHS - Cell division topological specificity factor OS=Escherichia coli O9:H4 (strain HS) GN=minE PE=3 SV=1 gi\|253973158, gi... - gi\|254161257\|ref\|YP_003044365.1\| cell division topological specificity factor MinE [Escherichia coli... gi\|75255652, gi\|... - gi\|75255652\|ref\|ZP_00727424.1\| COG0851: Septum formation topological specificity factor [Escherichia... gi\|254592051, gi... - gi\|254792651\|ref\|YP_003077488.1\| cell division topological specificity factor [Escherichia coli O157... gi\|188487093, gi... - gi\|75511644\|ref\|ZP_00734291.1\| COG0851: Septum formation topological specificity factor [Escherichia... gi\|75227594, gi\|... - gi\|75227594\|ref\|ZP_00714347.1\| COG0851: Septum formation topological specificity factor [Escherichia... gi\|191170938, gi... - gi\|75241977\|ref\|ZP_00725771.1\| COG0851: Septum formation topological specificity factor [Escherichia... gi\|83587319, gi\|... - gi\|83587319\|ref\|ZP_00925947.1\| COG0851: Septum formation topological specificity factor [Escherichia... MINE_SHIFL - Cell division topological specificity factor OS=Shigella flexneri GN=minE PE=3 SV=1 MINE_SHIB3 - Cell division topological specificity factor OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS... gi\|24051457, gi\|... - gi\|24112560\|ref\|NP_707070.1\| cell division topological specificity factor MinE [Shigella flexneri 2a... MINE_ECOL6 - Cell division topological specificity factor OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 ... gi\|89108019, gi\|... - gi\|89108019\|ref\|AP_001799.1\| cell division topological specificity factor [Escherichia coli str. K-1... MINE_ECOUT - Cell division topological specificity factor OS=Escherichia coli (strain UTI89 / UPEC) GN=minE PE=3 ... gi\|15830922, gi\|... - gi\|15830922\|ref\|NP_309695.1\| cell division topological specificity factor MinE [Escherichia coli O15... sp\|B7UQ59\|MINE_ECO27 - Cell division topological specificity factor OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN... MINE_ECOL5 - Cell division topological specificity factor OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=m... MINE_SHIF8 - Cell division topological specificity factor OS=Shigella flexneri serotype 5b (strain 8401) GN=minE ...	115.0	[0..110]	[199..1]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMSSGTLRI SATLVSPYHH HHRNRLSLPS SSSKVDFTGF ISNGVNSLET QKCTPGLAIS  60
   61 RENTRGQVKV LARNTGDYEL SPSPAEQEIE SFLYNAINMG FFDRLNLAWK IIFPSHASRR 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [121-229]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSNARIAKQR LKMILFSDRC DVSDEAKRKI VNNIIHALSD FVEIESEEKV QLNVSTDGDL  60
   61 GTIYSVTVPV RRVKPEYQDV DEAGTITNVE YKDTRDGSVD VRFDFYVPE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.0
Match:	1ev0A
Description:	Cell division protein MinE topological specificity domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits