YRC Public Data Repository - Protein Structure Prediction

Protein:	MINE1_ARATH
Organism:	Arabidopsis thaliana
Length:	229 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MINE1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|162461824, gi... - gi\|40217512\|dbj\|BAD05165.1\| MinE [Zea mays], gi\|162461824\|ref\|NP_001104870.1\| minE protein [Zea mays...	314.0	[0..1]	[228..1]
gi\|71089833 - gi\|71089833\|gb\|AAZ23773.1\| plastid division regulator MinE [Brassica napus]	260.0	[0..1]	[229..1]
gi\|47118332, gi\|... - gi\|47118332\|gb\|AAT11260.1\| putative cell division topological specificity factor [Oryza sativa (japo...	235.0	[0..1]	[228..1]
gi\|71089835 - gi\|71089835\|gb\|AAZ23774.1\| plastid division regulator MinE [Hordeum vulgare]	210.0	[0..2]	[228..6]
gi\|71089837 - gi\|71089837\|gb\|AAZ23775.1\| plastid division regulator MinE [Glycine max]	209.0	[0..1]	[229..1]
gi\|4775296 - gi\|4775296\|emb\|CAB42593.1\| putative MINE protein [Auxenochlorella protothecoides]	121.0	[0..100]	[207..69]
MINE_PECAS - Cell division topological specificity factor OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC... MINE_ERWCT - Cell division topological specificity factor OS=Erwinia carotovora subsp. atroseptica GN=minE PE=3 S...	118.0	[0..110]	[202..1]
gi\|205350611, gi... - gi\|205350611\|gb\|EDZ37242.1\| cell division topological specificity factor MinE [Salmonella enterica s... gi\|168462692, gi... - gi\|195634450\|gb\|EDX52802.1\| cell division topological specificity factor MinE [Salmonella enterica s... gi\|168820565, gi... - gi\|205342772\|gb\|EDZ29536.1\| cell division topological specificity factor MinE [Salmonella enterica s... MINE_SALNS - Cell division topological specificity factor OS=Salmonella newport (strain SL254) GN=minE PE=3 SV=1 gi\|167993268, gi... - gi\|205328653\|gb\|EDZ15417.1\| cell division topological specificity factor MinE [Salmonella enterica s... gi\|205331758, gi... - gi\|205331758\|gb\|EDZ18522.1\| cell division topological specificity factor MinE [Salmonella enterica s... gi\|197289206, gi... - gi\|197289206\|gb\|EDY28573.1\| cell division topological specificity factor MinE [Salmonella enterica s... gi\|205339227, gi... - gi\|205339227\|gb\|EDZ25991.1\| cell division topological specificity factor MinE [Salmonella enterica s... MINE_SALCH - Cell division topological specificity factor OS=Salmonella choleraesuis GN=minE PE=3 SV=1 MINE_SALCH - Cell division topological specificity factor OS=Salmonella choleraesuis (strain SC-B67) GN=minE PE=3... MINE_SALPA - Cell division topological specificity factor OS=Salmonella paratyphi A GN=minE PE=3 SV=1 MINE_SALPA - Cell division topological specificity factor OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) G... gi\|213580025 - gi\|213580025\|ref\|ZP_03361851.1\| cell division topological specificity factor MinE [Salmonella enteri... MINE_SALTI - Cell division topological specificity factor OS=Salmonella typhi GN=minE PE=3 SV=1 gi\|213609542 - gi\|213609542\|ref\|ZP_03369368.1\| cell division topological specificity factor MinE [Salmonella enteri... MINE_SALTY - Cell division topological specificity factor OS=Salmonella typhimurium GN=minE PE=3 SV=1 gi\|214002609 - gi\|214002609\|ref\|ZP_03413344.1\| cell division topological specificity factor MinE [Salmonella enteri... MINE_SALPC - Cell division topological specificity factor OS=Salmonella paratyphi C (strain RKS4594) GN=minE PE=3... lcl\|NC_016856.1_... - [gene=minE] [protein=cell division topological specificity factor MinE] [protein_id=YP_005237754.1] ... MINE_SALG2 - Cell division topological specificity factor OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) G... MINE_SALEP - Cell division topological specificity factor OS=Salmonella enteritidis PT4 (strain P125109) GN=minE ... gi\|213052595 - gi\|213052595\|ref\|ZP_03345473.1\| cell division topological specificity factor MinE [Salmonella enteri... gi\|213426610 - gi\|213426610\|ref\|ZP_03359360.1\| cell division topological specificity factor MinE [Salmonella enteri... gi\|197262920, gi... - gi\|197262920\|ref\|ZP_03162994.1\| cell division topological specificity factor MinE [Salmonella enteri... MINE_SALPB - Cell division topological specificity factor OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)... MINE_SALPK - Cell division topological specificity factor OS=Salmonella paratyphi A (strain AKU_12601) GN=minE PE... MINE_SALAR - Cell division topological specificity factor OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86... MINE_SALDC - Cell division topological specificity factor OS=Salmonella dublin (strain CT_02021853) GN=minE PE=3 ... gi\|200390793, gi... - gi\|200390793\|ref\|ZP_03217404.1\| cell division topological specificity factor MinE [Salmonella enteri... MINE_SALHS - Cell division topological specificity factor OS=Salmonella heidelberg (strain SL476) GN=minE PE=3 SV... gi\|194469036, gi... - gi\|194469036\|ref\|ZP_03075020.1\| cell division topological specificity factor MinE [Salmonella enteri... MINE_SALSV - Cell division topological specificity factor OS=Salmonella schwarzengrund (strain CVM19633) GN=minE ... MINE_SALCH - Cell division topological specificity factor OS=Salmonella choleraesuis GN=minE PE=3 SV=1 MINE_SALPB - Cell division topological specificity factor OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)... MINE_SALA4 - Cell division topological specificity factor OS=Salmonella agona (strain SL483) GN=minE PE=3 SV=1 MINE_SALTY - Cell division topological specificity factor OS=Salmonella typhimurium GN=minE PE=3 SV=1 gi\|238912119 - gi\|238912119\|ref\|ZP_04655956.1\| cell division topological specificity factor MinE [Salmonella enteri... gi\|227333438, gi... - gi\|228555198\|gb\|EEK19863.1\| hypothetical protein CIT292_03020 [Citrobacter youngae ATCC 29220], gi\|2... gi\|283785538\|ref... - Cell division topological specificity factor [Citrobacter rodentium ICC168] MINE_SALTI - Cell division topological specificity factor OS=Salmonella typhi GN=minE PE=3 SV=1 MINE_SALTY - Cell division topological specificity factor OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC... gi\|29141536, gi\|... - gi\|29141536\|ref\|NP_804878.1\| cell division topological specificity factor MinE [Salmonella enterica ... gi\|16760706 - gi\|16760706\|ref\|NP_456323.1\| cell division topological specificity factor MinE [Salmonella enterica ...	115.0	[0..110]	[201..1]
MINE_SYNP6 - Cell division topological specificity factor OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SA... MINE_SYNE7 - Cell division topological specificity factor OS=Synechococcus elongatus (strain PCC 7942) GN=minE PE...	115.0	[0..112]	[199..5]
gi\|30062691, gi\|... - gi\|30062691\|ref\|NP_836862.1\| cell division topological specificity factor MinE [Shigella flexneri 2a... MINE_ECO57 - Cell division topological specificity factor OS=Escherichia coli O157:H7 GN=minE PE=3 SV=1 EG10598 - cell division topological specificity factor / Blocks MinCD inhibition of FtsZ polymerization at cel... EG10598 - cell division topological specificity factor / Blocks MinCD inhibition of FtsZ polymerization at cel... gi\|73671289\|gb\|A... - MinE [Escherichia coli] gi\|15801396, gi\|... - gi\|15801396\|ref\|NP_287413.1\| cell division topological specificity factor MinE [Escherichia coli O15... MINE_ECOL6 - Cell division topological specificity factor OS=Escherichia coli O6 GN=minE PE=3 SV=1 MINE_ECOLI - Cell division topological specificity factor - Escherichia coli gi\|227836619, gi... - gi\|227886415\|ref\|ZP_04004220.1\| cell division topological specificity factor MinE [Escherichia coli ... gi\|237705126, gi... - gi\|237705126\|ref\|ZP_04535607.1\| cell division topological specificity factor MinE [Escherichia sp. 3... gi\|187766766, gi... - gi\|187766766\|gb\|EDU30610.1\| cell division topological specificity factor MinE [Escherichia coli O157... gi\|189356333, gi... - gi\|189356333\|gb\|EDU74752.1\| cell division topological specificity factor MinE [Escherichia coli O157... gi\|189372420, gi... - gi\|189372420\|gb\|EDU90836.1\| cell division topological specificity factor MinE [Escherichia coli O157... gi\|188999951, gi... - gi\|188999951\|gb\|EDU68937.1\| cell division topological specificity factor MinE [Escherichia coli O157... MINE_ECOSM - Cell division topological specificity factor OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=minE PE... MINE_ECODH - Cell division topological specificity factor OS=Escherichia coli (strain K12 / DH10B) GN=minE PE=3 S... gi\|217318601, gi... - gi\|217328174\|ref\|ZP_03444256.1\| cell division topological specificity factor MinE [Escherichia coli ... MINE_ECO27 - Cell division topological specificity factor OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN... MINE_ECO45 - Cell division topological specificity factor OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=minE... MINE_ECO8A - Cell division topological specificity factor OS=Escherichia coli O8 (strain IAI1) GN=minE PE=3 SV=1 MINE_ECO55 - Cell division topological specificity factor OS=Escherichia coli (strain 55989 / EAEC) GN=minE PE=3 ... MINE_ECO81 - Cell division topological specificity factor OS=Escherichia coli O81 (strain ED1a) GN=minE PE=3 SV=1 MINE_ECOLU - Cell division topological specificity factor OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)... MINE_ECO7I - Cell division topological specificity factor OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=min... MINE_SHIBS - Cell division topological specificity factor OS=Shigella boydii serotype 4 (strain Sb227) GN=minE PE... gi\|194416943, gi... - gi\|194434828\|ref\|ZP_03067077.1\| cell division topological specificity factor MinE [Shigella dysenter... MINE_ECOK1 - Cell division topological specificity factor OS=Escherichia coli O1:K1 / APEC GN=minE PE=3 SV=1 gi\|170122860, gi... - gi\|170768094\|ref\|ZP_02902547.1\| cell division topological specificity factor MinE [Escherichia alber... MINE_SHISS - Cell division topological specificity factor OS=Shigella sonnei (strain Ss046) GN=minE PE=3 SV=1 gi\|124498084, gi... - gi\|124532299\|ref\|ZP_01702193.1\| cell division topological specificity factor MinE [Escherichia coli ... gi\|208806085, gi... - gi\|208806085\|ref\|ZP_03248422.1\| cell division topological specificity factor MinE [Escherichia coli ... MINE_SHIDS - Cell division topological specificity factor OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=mi... gi\|195938827 - gi\|195938827\|ref\|ZP_03084209.1\| cell division topological specificity factor MinE [Escherichia coli ... gi\|208822719, gi... - gi\|208822719\|ref\|ZP_03263038.1\| cell division topological specificity factor MinE [Escherichia coli ... gi\|208732686, gi... - gi\|208816038\|ref\|ZP_03257217.1\| cell division topological specificity factor MinE [Escherichia coli ... MINE_ECOLC - Cell division topological specificity factor OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Croo... MINE_ECOSE - Cell division topological specificity factor OS=Escherichia coli (strain SE11) GN=minE PE=3 SV=1 MINE_ECO5E - Cell division topological specificity factor OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=m... gi\|75209224, gi\|... - gi\|75209224\|ref\|ZP_00709471.1\| COG0851: Septum formation topological specificity factor [Escherichia... MINE_ECOBW - Cell division topological specificity factor OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=m... gi\|193071663, gi... - gi\|75214765\|ref\|ZP_00713260.1\| COG0851: Septum formation topological specificity factor [Escherichia... gi\|251784682, gi... - gi\|251784682\|ref\|YP_002998986.1\| hypothetical protein B21_01159 [Escherichia coli BL21], gi\|24237695... MINE_ECO24 - Cell division topological specificity factor OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN... gi\|253324871, gi... - gi\|254288065\|ref\|YP_003053813.1\| cell division topological specificity factor MinE [Escherichia coli... MINE_ECOHS - Cell division topological specificity factor OS=Escherichia coli O9:H4 (strain HS) GN=minE PE=3 SV=1 gi\|253973158, gi... - gi\|254161257\|ref\|YP_003044365.1\| cell division topological specificity factor MinE [Escherichia coli... gi\|75255652, gi\|... - gi\|75255652\|ref\|ZP_00727424.1\| COG0851: Septum formation topological specificity factor [Escherichia... gi\|254592051, gi... - gi\|254792651\|ref\|YP_003077488.1\| cell division topological specificity factor [Escherichia coli O157... gi\|188487093, gi... - gi\|75511644\|ref\|ZP_00734291.1\| COG0851: Septum formation topological specificity factor [Escherichia... gi\|75227594, gi\|... - gi\|75227594\|ref\|ZP_00714347.1\| COG0851: Septum formation topological specificity factor [Escherichia... gi\|191170938, gi... - gi\|75241977\|ref\|ZP_00725771.1\| COG0851: Septum formation topological specificity factor [Escherichia... gi\|83587319, gi\|... - gi\|83587319\|ref\|ZP_00925947.1\| COG0851: Septum formation topological specificity factor [Escherichia... MINE_SHIFL - Cell division topological specificity factor OS=Shigella flexneri GN=minE PE=3 SV=1 MINE_SHIB3 - Cell division topological specificity factor OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS... gi\|24051457, gi\|... - gi\|24112560\|ref\|NP_707070.1\| cell division topological specificity factor MinE [Shigella flexneri 2a... MINE_ECOL6 - Cell division topological specificity factor OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 ... gi\|89108019, gi\|... - gi\|89108019\|ref\|AP_001799.1\| cell division topological specificity factor [Escherichia coli str. K-1... MINE_ECOUT - Cell division topological specificity factor OS=Escherichia coli (strain UTI89 / UPEC) GN=minE PE=3 ... gi\|15830922, gi\|... - gi\|15830922\|ref\|NP_309695.1\| cell division topological specificity factor MinE [Escherichia coli O15... sp\|B7UQ59\|MINE_ECO27 - Cell division topological specificity factor OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN... MINE_ECOL5 - Cell division topological specificity factor OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=m... MINE_SHIF8 - Cell division topological specificity factor OS=Shigella flexneri serotype 5b (strain 8401) GN=minE ...	115.0	[0..110]	[199..1]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMSSGTLRI SATLVSPYHH HHRNRLSLPS SSSKVDFTGF ISNGVNSLET QKCTPGLAIS  60
   61 RENTRGQVKV LARNTGDYEL SPSPAEQEIE SFLYNAINMG FFDRLNLAWK IIFPSHASRR 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.707	a.60.9	lambda integrase-like, N-terminal domain
View	Download	0.581	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.581	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.581	a.1.1	Globin-like
View	Download	0.535	a.118.8	TPR-like
View	Download	0.535	a.118.8	TPR-like
View	Download	0.523	a.39.3	Cloroperoxidase
View	Download	0.508	a.1.1	Globin-like
View	Download	0.365	d.42.1	POZ domain
View	Download	0.307	a.23.2	Diol dehydratase, gamma subunit
View	Download	0.302	a.36.1	Signal peptide-binding domain
View	Download	0.267	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.266	a.23.2	Diol dehydratase, gamma subunit

Predicted Domain #2

Region A:
Residues: [121-229]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSNARIAKQR LKMILFSDRC DVSDEAKRKI VNNIIHALSD FVEIESEEKV QLNVSTDGDL  60
   61 GTIYSVTVPV RRVKPEYQDV DEAGTITNVE YKDTRDGSVD VRFDFYVPE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.0
Match:	1ev0A
Description:	Cell division protein MinE topological specificity domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits