| Protein: | BLH8_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 584 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BLH8_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
274.0 | [0..56] | [503..17] |
|
Region A: Residues: [1-200] |
1 11 21 31 41 51
| | | | | |
1 MDMIKPDFQQ IRRDKFRVEQ MNDFPNTWTQ QQHQNIRIPN NLDLIGILQN QISVPVQTDL 60
61 YQDSAATFMN MPQSIHRDPQ GPSNWRISDL SQPSTVNHGY DQAGIRPNNV ADLLSDHFSS 120
121 RNQILDRPLY VGRDSIPQSS MIRRSEVSCL DDNQKGCVTV ACSGTGNEIL RSSYDQGSSS 180
181 GSYRGEFSFL PSLENQSVAH
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [201-305] |
1 11 21 31 41 51
| | | | | |
1 NASNWNHGPV NVTATSHTNS KKGFPLSLLS DIPPSRDVGN AAVLSTMNIH GPLGPFTGYA 60
61 SILKSSRFLE PAQKMLEEFC ISYASKIISR SESTSMEDDD DDDDN
|
| Detection Method: | |
| Confidence: | 6.0 |
| Match: | 6paxA |
| Description: | Pax-6 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.334577365229545 | bayes_pls_golite062009 |
| transcription regulator activity | 0.0696342306231097 | bayes_pls_golite062009 |
|
Region A: Residues: [306-498] |
1 11 21 31 41 51
| | | | | |
1 LSGFSSSSEP LEPKNRLKKA KLLFLQEEVC KWYKLYNHQL QTVMSSFNTV AGLNTATPYI 60
61 SLALKRTSRS FKALRTAIAE HVKQISSHSS NGNNNNRFQK RQRSLIGNNV GFESQQQHIW 120
121 RPQRGLPERA VAVLRAWLFD HFLHPYPTDS DKQMLATQTG LSRNQVSNWF INARVRLWKP 180
181 MVEEIHTLET KAI
|
| Detection Method: | |
| Confidence: | 13.154902 |
| Match: | 1o4xA |
| Description: | TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.971797124886045 | bayes_pls_golite062009 |
| nucleic acid binding | 0.74904610690468 | bayes_pls_golite062009 |
| DNA binding | 0.73457854282882 | bayes_pls_golite062009 |
|
Region A: Residues: [499-584] |
1 11 21 31 41 51
| | | | | |
1 KNADTSHNIE PSNRPNTVSS PSHEQTLTGL SGTKRSRLEY MDMVGFNRGN VSLTLELRRG 60
61 VDNVIQTQTQ DHQFGTGSQM FHDFVG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
