YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|6503305, gi\|2...
Organism:	Arabidopsis thaliana
Length:	900 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6503305, gi|2....

Description	E-value	Query Range	Subject Range
gi\|110748774 - gi\|110748774\|ref\|XP_001120152.1\| PREDICTED: similar to CG12750-PA [Apis mellifera]	549.0	[0..284]	[859..4]
gi\|90304122, gi\|... - gi\|90304122\|gb\|EAS33753.1\| conserved hypothetical protein [Coccidioides immitis RS], gi\|119189459\|re...	541.0	[0..270]	[899..49]
gi\|77548658, gi\|... - gi\|77548658\|gb\|ABA91455.1\| Major Facilitator Superfamily protein, expressed [Oryza sativa (japonica ...	529.0	[0..278]	[856..55]
gi\|58390283, gi\|... - gi\|58390283\|ref\|XP_317618.2\| ENSANGP00000007281 [Anopheles gambiae str. PEST], gi\|55237831\|gb\|EAA122...	521.0	[0..280]	[856..89]
gi\|71051531 - gi\|71051531\|gb\|AAH31216.1\| CWC22 protein [Homo sapiens]	516.0	[0..210]	[860..9]
gi\|83765669 - gi\|83765669\|dbj\|BAE55812.1\| unnamed protein product [Aspergillus oryzae] gi\|169766686 - gi\|169766686\|ref\|XP_001817814.1\| hypothetical protein [Aspergillus oryzae RIB40]	510.0	[0..268]	[869..50]
gi\|19113048 - gi\|19113048\|ref\|NP_596256.1\| hypothetical protein SPBC15D4.16 [Schizosaccharomyces pombe 972h-] gi\|3451474, gi\|1... - gi\|3451474\|emb\|CAA20491.1\| SPBC13E7.01 [Schizosaccharomyces pombe], ref\|NP_596256.1\| conserved hypot...	505.0	[0..256]	[864..17]
gi\|19528255 - gi\|19528255\|gb\|AAL90242.1\| GH13383p [Drosophila melanogaster]	504.0	[0..3]	[871..61]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRHGSSSDE EERVRRRDRR RRERSPDVRR SRTETDDVAR RVRVSDDEDR KSSRRDLEIG  60
   61 GTVADGEGRR GDKVRRKETS DDEELARRSR KDRKEANSGS EDDRGKRIEV DSDGDGERRV 120
  121 NKGRNTDRVR ADTSSDEEDD LKGNKKEPME VDDDYGRRGR RRSPKVMEKQ GRERSHRGSR 180
  181 VIADKPSDEE DDRQRSR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [198-328]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGRRESQRKR RDHRASDDDE EGEIRSERRG KEKNDRGSEG LLKRDRRERD LTDGHENGSR  60
   61 RRESERKDRS RRDDGVRDEK ERRHNDKYDD SQRDKLRKED SRKREEKKIE VPKPKLAELN 120
  121 PSENNAMALG K

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [329-567]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGGVYIPPFK LARMMKEVED KSSVEYQRLT WDALRKSING LVNKVNASNI KNIIPELFAE  60
   61 NLIRGRGLFC RSCMKSQMAS PGFTDVFAAL VAVINAKFPE VAELLLKRVV LQLKRAYKRN 120
  121 DKPQLLAAVK FIAHLVNQQV AEEIIALELV TILLGDPTDD SVEVAVGFVT ECGAMLQDVS 180
  181 PRGLNGIFER FRGILHEGEI DKRVQYLIES LFATRKAKFQ GHPAVRPELD LVEEKYSHD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.69897
Match:	1hu3A
Description:	Eukaryotic initiation factor eIF4G
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [568-673]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSLDHEIDPE TALDIFKPDP DFVENEKKYE ALKKELLGDE ESEDEDGSDA SSEDNDEEED  60
   61 ESDEEDEEQM RIRDETETNL VNLRRTIYLT IMSSVDFEEA GHKLLK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [674-900]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IKLEPGQEME LCIMLLECCS QERTYLRYYG LLGQRFCMIN KIHQENFEKC FVQQYSMIHR  60
   61 LETNKLRNVA KFFAHLLGTD ALPWHVLAYI RLTEEDTTSS SRIFIKILFQ ELSEHLGIRL 120
  121 LNERLQDPTM QESLESIFPK DNPKNTRFAI NFFTSIGLGG ITENLREYLK NMPSLIMQRQ 180
  181 KQVAESESGS SSGSDSSDSE SESESGSSSS SSSDESDREK RKRRRRS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits