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View Structure Prediction Details

Protein: gi|29294056, gi|...
Organism: Arabidopsis thaliana
Length: 449 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29294056, gi|....

Description E-value Query
Range
Subject
Range
gi|125534684 - gi|125534684|gb|EAY81232.1| hypothetical protein OsI_36407 [Oryza sativa Indica Group]
gi|125577437, gi... - gi|77551398|gb|ABA94195.1| membrane associated salt-inducible protein, putative, expressed [Oryza sa...
489.0 [0..43] [441..1]

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Predicted Domain #1
Region A:
Residues: [1-235]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGLRCWLQF YRNGNAHNVF AIMPERNVLY GESSFRRVWV RFMTSSKRVQ DRSREKRVQE  60
   61 LEIATEKWKI ASKVIFLMEV LKGERDMIMT VRSFEQYRRQ INLPKPHKIS DFIRKSPKLF 120
  121 ELYKDQRGVL WCGLTEGGED LLDEHDKLLE ENGDKAAEHV TRCLMMSVDK KLPLDKIVHF 180
  181 RRDFGLPLDF RINWVYNFPQ HFKVVKLGDG EEYLELVSWN PAWAITELEK KTLGI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [236-449]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEDCEHKPGM LSLAFPMKFP PSYKKMYRYR GKIEHFQKRS YLSPYADARG LEAGSKEFDK  60
   61 RAIAVMHELL SFTLEKRLVT DHLTHFRREF VMPQKLMRIF LKHCGIFYVS ERGKRFSVFL 120
  121 TEGYEGPELI EKCPLILWKE KLLKFTGYRG RKRDIQTYSD TLDMEERELL ESGSGDEDLS 180
  181 VGFEKDGDYD DVVTDDDEMD IGEVNDAYEE NSKV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle