YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|29294056, gi|...
Organism: Arabidopsis thaliana
Length: 449 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29294056, gi|....

Description E-value Query
Range
Subject
Range
gi|125534684 - gi|125534684|gb|EAY81232.1| hypothetical protein OsI_36407 [Oryza sativa Indica Group]
gi|125577437, gi... - gi|77551398|gb|ABA94195.1| membrane associated salt-inducible protein, putative, expressed [Oryza sa...
489.0 [0..43] [441..1]

Back

Predicted Domain #1
Region A:
Residues: [1-235]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGLRCWLQF YRNGNAHNVF AIMPERNVLY GESSFRRVWV RFMTSSKRVQ DRSREKRVQE  60
   61 LEIATEKWKI ASKVIFLMEV LKGERDMIMT VRSFEQYRRQ INLPKPHKIS DFIRKSPKLF 120
  121 ELYKDQRGVL WCGLTEGGED LLDEHDKLLE ENGDKAAEHV TRCLMMSVDK KLPLDKIVHF 180
  181 RRDFGLPLDF RINWVYNFPQ HFKVVKLGDG EEYLELVSWN PAWAITELEK KTLGI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [236-449]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEDCEHKPGM LSLAFPMKFP PSYKKMYRYR GKIEHFQKRS YLSPYADARG LEAGSKEFDK  60
   61 RAIAVMHELL SFTLEKRLVT DHLTHFRREF VMPQKLMRIF LKHCGIFYVS ERGKRFSVFL 120
  121 TEGYEGPELI EKCPLILWKE KLLKFTGYRG RKRDIQTYSD TLDMEERELL ESGSGDEDLS 180
  181 VGFEKDGDYD DVVTDDDEMD IGEVNDAYEE NSKV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle