YRC Public Data Repository - Protein Structure Prediction

Protein:	CCB1_ARATH
Organism:	Arabidopsis thaliana
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCB1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|1402889 - gi\|1402889\|emb\|CAA66820.1\| hypothetical protein [Arabidopsis thaliana]	358.0	[0..1]	[267..1]
gi\|77551216, gi\|... - gi\|77551216\|gb\|ABA94013.1\| expressed protein [Oryza sativa (japonica cultivar-group)], gi\|115485707\|...	224.0	[0..81]	[264..80]
gi\|33241188, gi\|... - gi\|33241188\|ref\|NP_876130.1\| hypothetical protein Pro1739 [Prochlorococcus marinus subsp. marinus st...	218.0	[0..85]	[257..3]
gi\|46119495, gi\|... - gi\|67923215\|ref\|ZP_00516702.1\| hypothetical protein CwatDRAFT_3009 [Crocosphaera watsonii WH 8501], ...	205.0	[0..87]	[253..4]
gi\|33866570, gi\|... - gi\|33866570\|ref\|NP_898129.1\| hypothetical protein SYNW2038 [Synechococcus sp. WH 8102], gi\|33633348\|...	200.0	[0..85]	[249..3]
gi\|25343635 - pir\|\|AE2303 hypothetical protein alr3980 [imported] - Nostoc sp. (strain PCC 7120) gi\|17231472, gi\|... - gi\|17231472\|ref\|NP_488020.1\| hypothetical protein alr3980 [Nostoc sp. PCC 7120], gi\|17133114\|dbj\|BAB...	198.0	[0..85]	[252..4]
gi\|23123893, gi\|... - gi\|23123893\|ref\|ZP_00105925.1\| hypothetical protein Npun02008401 [Nostoc punctiforme PCC 73102], gi\|...	197.0	[0..99]	[252..18]
gi\|33635555, gi\|... - gi\|33863971\|ref\|NP_895531.1\| hypothetical protein PMT1704 [Prochlorococcus marinus str. MIT 9313], g...	196.0	[0..98]	[257..16]
gi\|45507539, gi\|... - gi\|75907942\|ref\|YP_322238.1\| hypothetical protein Ava_1721 [Anabaena variabilis ATCC 29413], gi\|7570...	196.0	[0..85]	[252..4]
gi\|84513859, gi\|... - gi\|84519110\|ref\|ZP_01006459.1\| Uncharacterized membrane protein [Prochlorococcus marinus str. MIT 92...	196.0	[0..85]	[257..3]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATKLISPPL SCPWVTSREV IIKGLPRRRR EWMVTKRNRV SAVTAMIVEP LSVVSSSAIQ  60
   61 IHQWWEQNPN SLLLMTEAT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.850	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain

Predicted Domain #2

Region A:
Residues: [80-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGYSLASYYT SLGLFVISVP GLWSLIKRSV KSKIVRKTFV VNDVKKEPKQ VAGEILSFFT  60
   61 RKNFNITDRG ETITFEGKMV PSRGQAALLT FCTCISLASV GLVLTITVPD FGNNWFFIIL 120
  121 LSPLAGVYYW KKASRKEEIK VKMMVGSKGR LDEIVVQGDD VQVEEMRKEL QLNEKGMVYV 180
  181 KGLFERSS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits