YRC Public Data Repository - Protein Structure Prediction

Protein:	SAU20_ARATH
Organism:	Arabidopsis thaliana
Length:	91 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SAU20_ARATH.

Description	E-value	Query Range	Subject Range
SAU22_ARATH - Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana GN=SAUR22 PE=2 SV=1	147.0	[0..1]	[90..1]
gi\|7442216, gi\|3... - pir\|\|T07798 auxin-induced protein SAUR - radish (fragment), gi\|3043536\|dbj\|BAA25434.1\| SAUR [Raphan...	141.0	[0..1]	[89..1]
gi\|7488613, gi\|2... - pir\|\|T17020 auxin-induced protein - apple tree, gi\|2924327\|emb\|CAB07785.1\| hypothetical protein [Mal...	132.0	[0..2]	[89..10]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFVRSLLGA KKILSRSTTA ASAAPKGFLA VYVGESQKKR YLVPISYLNQ PSFQALLSKS  60
   61 EEEFGFDHPM GGLTIPCPED TFINVTSRFQ R

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	42.721246
Match:	PF02519.5
Description:	No description for PF02519.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits