| Protein: | HDG11_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 722 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HDG11_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
799.0 | [0..16] | [716..10] |
|
|
797.0 | [0..10] | [713..91] |
|
|
790.0 | [0..16] | [719..41] |
|
|
789.0 | [0..10] | [716..83] |
|
Region A: Residues: [1-95] |
1 11 21 31 41 51
| | | | | |
1 MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK 60
61 QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERAD
|
| Detection Method: |  |
| Confidence: | 20.39794 |
| Match: | 1fjlA |
| Description: | Paired protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [96-218] |
1 11 21 31 41 51
| | | | | |
1 NSALKAENDK IRCENIAIRE ALKHAICPNC GGPPVSEDPY FDEQKLRIEN AHLREELERM 60
61 STIASKYMGR PISQLSTLHP MHISPLDLSM TSLTGCGPFG HGPSLDFDLL PGSSMAVGPN 120
121 NNL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.763 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.558 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.476 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.430 | a.25.3 | Description not found. |
| View | Download | 0.429 | a.47.2 | t-snare proteins |
| View | Download | 0.429 | a.47.2 | t-snare proteins |
| View | Download | 0.358 | a.24.3 | Cytochromes |
| View | Download | 0.356 | a.1.1 | Globin-like |
| View | Download | 0.314 | a.24.3 | Cytochromes |
| View | Download | 0.310 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
|
Region A: Residues: [219-469] |
1 11 21 31 41 51
| | | | | |
1 QSQPNLAISD MDKPIMTGIA LTAMEELLRL LQTNEPLWTR TDGCRDILNL GSYENVFPRS 60
61 SNRGKNQNFR VEASRSSGIV FMNAMALVDM FMDCVKWTEL FPSIIAASKT LAVISSGMGG 120
121 THEGALHLLY EEMEVLSPLV ATREFCELRY CQQTEQGSWI VVNVSYDLPQ FVSHSQSYRF 180
181 PSGCLIQDMP NGYSKVTWVE HIETEEKELV HELYREIIHR GIAFGADRWV TTLQRMCERF 240
241 ASLSVPASSS R
|
| Detection Method: | |
| Confidence: | 2.71 |
| Match: | 2r55A |
| Description: | No description for 2r55A was found. |
|
Region A: Residues: [470-591] |
1 11 21 31 41 51
| | | | | |
1 DLGGVILSPE GKRSMMRLAQ RMISNYCLSV SRSNNTRSTV VSELNEVGIR VTAHKSPEPN 60
61 GTVLCAATTF WLPNSPQNVF NFLKDERTRP QWDVLSNGNA VQEVAHISNG SHPGNCISVL 120
121 RG
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.792 | a.29.13 | Description not found. |
| View | Download | 0.702 | a.216.1 | Description not found. |
| View | Download | 0.674 | a.29.13 | Description not found. |
| View | Download | 0.647 | d.110.4 | SNARE-like |
| View | Download | 0.646 | d.218.1 | Nucleotidyltransferase |
| View | Download | 0.646 | d.218.1 | Nucleotidyltransferase |
| View | Download | 0.588 | d.24.1 | Pili subunits |
| View | Download | 0.587 | d.110.4 | SNARE-like |
| View | Download | 0.451 | d.82.2 | Frataxin-like |
| View | Download | 0.382 | b.55.1 | PH domain-like |
| View | Download | 0.337 | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.302 | d.110.4 | SNARE-like |
| View | Download | 0.276 | d.110.4 | SNARE-like |
| View | Download | 0.271 | a.25.1 | Ferritin-like |
|
Region A: Residues: [592-722] |
1 11 21 31 41 51
| | | | | |
1 SNATHSNNML ILQESSTDSS GAFVVYSPVD LAALNIAMSG EDPSYIPLLS SGFTISPDGN 60
61 GSNSEQGGAS TSSGRASASG SLITVGFQIM VSNLPTAKLN MESVETVNNL IGTTVHQIKT 120
121 ALSGPTASTT A
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.695 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.652 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.652 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.539 | N/A | N/A | d.110.1 | Profilin (actin-binding protein) |
| View | Download | 0.515 | N/A | N/A | c.16.1 | Lumazine synthase |
| View | Download | 0.515 | N/A | N/A | c.16.1 | Lumazine synthase |
| View | Download | 0.497 | N/A | N/A | a.244.1 | Description not found. |
| View | Download | 0.463 | N/A | N/A | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.463 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.305 | N/A | N/A | d.80.1 | Tautomerase/MIF |
| View | Download | 0.286 | N/A | N/A | c.44.1 | Phosphotyrosine protein phosphatases I |
| View | Download | 0.286 | N/A | N/A | c.48.1 | TK C-terminal domain-like |
| View | Download | 0.280 | N/A | N/A | d.227.1 | OsmC-like |
| View | Download | 0.251 | N/A | N/A | d.227.1 | OsmC-like |
