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View Structure Prediction Details

Protein: ARAE1_ARATH
Organism: Arabidopsis thaliana
Length: 419 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARAE1_ARATH.

Description E-value Query
Range
Subject
Range
gi|24417398 - gi|24417398|gb|AAN60309.1| unknown [Arabidopsis thaliana]
375.0 [0..1] [419..1]

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Predicted Domain #1
Region A:
Residues: [1-69]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSFGRARSQ GRQNRSMSLG GLDYADPKKK NNYLGKILLT ASLTALCIFM LKQSPTFNTP  60
   61 SVFSRHEPG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.69897
Match: 2z5lA
Description: No description for 2z5lA was found.

Predicted Domain #2
Region A:
Residues: [70-419]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTHVLVTGGA GYIGSHAALR LLKESYRVTI VDNLSRGNLA AVRILQELFP EPGRLQFIYA  60
   61 DLGDAKAVNK IFTENAFDAV MHFAAVAYVG ESTQFPLKYY HNITSNTLVV LETMAAHGVK 120
  121 TLIYSSTCAT YGEPDIMPIT EETPQVPINP YGKAKKMAED IILDFSKNSD MAVMILRYFN 180
  181 VIGSDPEGRL GEAPRPELRE HGRISGACFD AARGIMPGLQ IKGTDYKTAD GTCVRDYIDV 240
  241 TDLVDAHVKA LQKAKPRKVG IYNVGTGKGS SVKEFVEACK KATGVEIKID YLPRRAGDYA 300
  301 EVYSDPSKIR KELNWTAKHT NLKESLETAW RWQKLHRNGY GLTTSSVSVY 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 86.221849
Match: 1lrjA
Description: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
UDP-glucose 4-epimerase activity 2.13934644118967 bayes_pls_golite062009
catalytic activity 1.79741889688267 bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors 1.03956654822048 bayes_pls_golite062009
nucleic acid binding 0.868888700854563 bayes_pls_golite062009
binding 0.835119783772935 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 0.82673050487418 bayes_pls_golite062009
DNA binding 0.790382977752475 bayes_pls_golite062009
alcohol dehydrogenase (NAD) activity 0.65743456407889 bayes_pls_golite062009
transcription regulator activity 0.613310508772122 bayes_pls_golite062009
retinol dehydrogenase activity 0.48941662111046 bayes_pls_golite062009
transcription factor activity 0.11102650759187 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle