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View Structure Prediction Details

Protein: CARB_ARATH
Organism: Arabidopsis thaliana
Length: 1187 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for CARB_ARATH.

Predicted Domain #1
Region A:
Residues: [1-96]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNHCLELSS NCSSIFASSK SNPRFSPSKL SYSTFFSRSA IYYRSKPKQA SSSSSFSTFP  60
   61 PCLNRKSSLT HVLKPVSELA DTTTKPFSPE IVGKRT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [97-1187]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLKKIMILGA GPIVIGQACE FDYSGTQACK ALREEGYEVI LINSNPATIM TDPETANRTY  60
   61 IAPMTPELVE QVIEKERPDA LLPTMGGQTA LNLAVALAES GALEKYGVEL IGAKLGAIKK 120
  121 AEDRELFKDA MKNIGLKTPP SGIGTTLDEC FDIAEKIGEF PLIIRPAFTL GGTGGGIAYN 180
  181 KEEFESICKS GLAASATSQV LVEKSLLGWK EYELEVMRDL ADNVVIICSI ENIDPMGVHT 240
  241 GDSITVAPAQ TLTDREYQRL RDYSIAIIRE IGVECGGSNV QFAVNPVDGE VMIIEMNPRV 300
  301 SRSSALASKA TGFPIAKMAA KLSVGYTLDQ IPNDITRKTP ASFEPSIDYV VTKIPRFAFE 360
  361 KFPGSQPLLT TQMKSVGESM ALGRTFQESF QKALRSLECG FSGWGCAKIK ELDWDWDQLK 420
  421 YSLRVPNPDR IHAIYAAMKK GMKIDEIYEL SMVDKWFLTQ LKELVDVEQY LMSGTLSEIT 480
  481 KEDLYEVKKR GFSDKQIAFA TKTTEEEVRT KRISLGVVPS YKRVDTCAAE FEAHTPYMYS 540
  541 SYDVECESAP NNKKKVLILG GGPNRIGQGI EFDYCCCHTS FALQDAGYET IMLNSNPETV 600
  601 STDYDTSDRL YFEPLTIEDV LNVIDLEKPD GIIVQFGGQT PLKLALPIKH YLDKHMPMSL 660
  661 SGAGPVRIWG TSPDSIDAAE DRERFNAILD ELKIEQPKGG IAKSEADALA IAKEVGYPVV 720
  721 VRPSYVLGGR AMEIVYDDSR LITYLENAVQ VDPERPVLVD KYLSDAIEID VDTLTDSYGN 780
  781 VVIGGIMEHI EQAGVHSGDS ACMLPTQTIP ASCLQTIRTW TTKLAKKLNV CGLMNCQYAI 840
  841 TTSGDVFLLE ANPRASRTVP FVSKAIGHPL AKYAALVMSG KSLKDLNFEK EVIPKHVSVK 900
  901 EAVFPFEKFQ GCDVILGPEM RSTGEVMSIS SEFSSAFAMA QIAAGQKLPL SGTVFLSLND 960
  961 MTKPHLEKIA VSFLELGFKI VATSGTAHFL ELKGIPVERV LKLHEGRPHA ADMVANGQIH1020
 1021 LMLITSSGDA LDQKDGRQLR QMALAYKVPV ITTVAGALAT AEGIKSLKSS AIKMTALQDF1080
 1081 FEVKNVSSLL V

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1bxrA
Description: Carbamoyl phosphate synthetase, large subunit connection domain; Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain; Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains; Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle