| Protein: | DDM1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 764 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DDM1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
543.0 | [0..1] | [764..1] |
|
Region A: Residues: [1-188] |
1 11 21 31 41 51
| | | | | |
1 MVSLRSRKVI PASEMVSDGK TEKDASGDSP TSVLNEEENC EEKSVTVVEE EILLAKNGDS 60
61 SLISEAMAQE EEQLLKLRED EEKANNAGSA VAPNLNETQF TKLDELLTQT QLYSEFLLEK 120
121 MEDITINGIE SESQKAEPEK TGRGRKRKAA SQYNNTKAKR AVAAMISRSK EDGETINSDL 180
181 TEEETVIK
|
| Detection Method: |  |
| Confidence: | 11.39794 |
| Match: | 2b2uA |
| Description: | Tandem chromodomains of human CHD1 complexed with Histone H3 Tail containing trimethyllysine 4 and dimethylarginine 2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription repressor activity | 4.08500855631983 | bayes_pls_golite062009 |
| transcription regulator activity | 3.64390820819794 | bayes_pls_golite062009 |
| chromatin binding | 3.1924157640698 | bayes_pls_golite062009 |
| binding | 3.06758476214113 | bayes_pls_golite062009 |
| nucleic acid binding | 2.19167058827256 | bayes_pls_golite062009 |
| DNA binding | 2.05514577638135 | bayes_pls_golite062009 |
| histone binding | 2.00388175060339 | bayes_pls_golite062009 |
| protein binding | 1.61683263008775 | bayes_pls_golite062009 |
| methylated histone residue binding | 1.03331560428208 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.998957812785999 | bayes_pls_golite062009 |
| general transcriptional repressor activity | 0.75184432495983 | bayes_pls_golite062009 |
| DNA helicase activity | 0.726970683178132 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.494788451379878 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.294457188332415 | bayes_pls_golite062009 |
| catalytic activity | 0.14067200158938 | bayes_pls_golite062009 |
| transcription activator activity | 0.136090220479238 | bayes_pls_golite062009 |
|
Region A: Residues: [189-764] |
1 11 21 31 41 51
| | | | | |
1 LQNELCPLLT GGQLKSYQLK GVKWLISLWQ NGLNGILADQ MGLGKTIQTI GFLSHLKGNG 60
61 LDGPYLVIAP LSTLSNWFNE IARFTPSINA IIYHGDKNQR DELRRKHMPK TVGPKFPIVI 120
121 TSYEVAMNDA KRILRHYPWK YVVIDEGHRL KNHKCKLLRE LKHLKMDNKL LLTGTPLQNN 180
181 LSELWSLLNF ILPDIFTSHD EFESWFDFSE KNKNEATKEE EEKRRAQVVS KLHGILRPFI 240
241 LRRMKCDVEL SLPRKKEIIM YATMTDHQKK FQEHLVNNTL EAHLGENAIR GQGWKGKLNN 300
301 LVIQLRKNCN HPDLLQGQID GSYLYPPVEE IVGQCGKFRL LERLLVRLFA NNHKVLIFSQ 360
361 WTKLLDIMDY YFSEKGFEVC RIDGSVKLDE RRRQIKDFSD EKSSCSIFLL STRAGGLGIN 420
421 LTAADTCILY DSDWNPQMDL QAMDRCHRIG QTKPVHVYRL STAQSIETRV LKRAYSKLKL 480
481 EHVVIGQGQF HQERAKSSTP LEEEDILALL KEDETAEDKL IQTDISDADL DRLLDRSDLT 540
541 ITAPGETQAA EAFPVKGPGW EVVLPSSGGM LSSLNS
|
| Detection Method: | |
| Confidence: | 80.522879 |
| Match: | 1z63A |
| Description: | Sulfolobus solfataricus SWI2/SNF2 ATPase core in complex with dsDNA |
Matching Structure (courtesy of the PDB): |
|
