YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CSLD3_ARATH
Organism: Arabidopsis thaliana
Length: 1145 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for CSLD3_ARATH.

Predicted Domain #1
Region A:
Residues: [1-104]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNNHFMNS RSNLSTNSDA AEAERHQQPV SNSVTFARRT PSGRYVNYSR DDLDSELGSV  60
   61 DLTGYSVHIP PTPDNQPMDP SISQKVEEQY VSNSLFTGGF NSVT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [105-267]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RAHLMEKVID TETSHPQMAG AKGSSCAVPG CDVKVMSDER GQDLLPCECD FKICRDCFMD  60
   61 AVKTGGMCPG CKEPYRNTDL ADFADNNKQQ RPMLPPPAGG SKMDRRLSLM KSTKSGLMRS 120
  121 QTGDFDHNRW LFETSGTYGF GNAFWTKDGN FGSDKDGNGH GMG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.221849
Match: 1weoA
Description: Solution structure of RING-finger in the catalytic subunit (IRX3) of cellulose synthase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [268-314]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQDLMSRPWR PLTRKLQIPA AVISPYRLLI LIRIVVLALF LMWRIKH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [315-436]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNPDAIWLWG MSVVCELWFA LSWLLDQLPK LCPINRATDL NVLKEKFETP TPSNPTGKSD  60
   61 LPGLDMFVST ADPEKEPPLV TSNTILSILA ADYPVEKLAC YVSDDGGALL TFEAMAEAAS 120
  121 FA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [437-668]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NMWVPFCRKH NIEPRNPDSY FSLKRDPYKN KVKADFVKDR RRVKREYDEF KVRINSLPDS  60
   61 IRRRSDAYHA REEIKAMKLQ RQNRDEEIVE PVKIPKATWM ADGTHWPGTW INSGPDHSRS 120
  121 DHAGIIQVML KPPSDEPLHG VSEGFLDLTD VDIRLPLLVY VSREKRPGYD HNKKAGAMNA 180
  181 LVRASAIMSN GPFILNLDCD HYIYNSQALR EGMCFMMDRG GDRLCYVQFP QR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.0
Match: 2z87A
Description: No description for 2z87A was found.

Predicted Domain #6
Region A:
Residues: [669-742]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FEGIDPSDRY ANHNTVFFDV NMRALDGLMG PVYVGTGCLF RRIALYGFDP PRAKEHHPGF  60
   61 CSCCFSRKKK KSRV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.522879
Match: 1h7lA
Description: Spore coat polysaccharide biosynthesis protein SpsA
Matching Structure (courtesy of the PDB):

Predicted Domain #7
Region A:
Residues: [743-811]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEENRSLRMG GDSDDDEEMN LSLVPKKFGN STFLIDSIPV AEFQGRPLAD HPAVQNGRPP  60
   61 GALTIPREL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [812-906]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDASTVAEAI AVISCWYEDK TEWGSRIGWI YGSVTEDVVT GYRMHNRGWK SVYCVTKRDA  60
   61 FRGTAPINLT DRLHQVLRWA TGSVEIFFSR NNAFF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #9
Region A:
Residues: [907-1145]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASPRMKILQR IAYLNVGIYP FTSFFLIVYC FLPALSLFSG QFIVQTLNVT FLVYLLIISI  60
   61 TLCLLALLEI KWSGISLEEW WRNEQFWLIG GTSAHLAAVI QGLLKVVAGI EISFTLTSKS 120
  121 GGEDVDDEFA DLYIVKWTSL MIPPITIMMV NLIAIAVGFS RTIYSVIPQW SKLIGGVFFS 180
  181 FWVLAHLYPF AKGLMGRRGR TPTIVYVWSG LVAITISLLW VAINPPAGST QIGGSFTFP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle