| Protein: | DSK2B_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 551 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DSK2B_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
257.0 | [0..2] | [549..12] |
|
Region A: Residues: [1-88] |
1 11 21 31 41 51
| | | | | |
1 MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL 60
61 IYKGRILKDD QTLLSYGLQA DHTIHMVR
|
| Detection Method: |  |
| Confidence: | 20.0 |
| Match: | 1yx5B |
| Description: | Solution Structure of S5a UIM-1/Ubiquitin Complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.0934358341245259 | bayes_pls_golite062009 |
| protein binding | 0.03789551947602 | bayes_pls_golite062009 |
|
Region A: Residues: [89-276] |
1 11 21 31 41 51
| | | | | |
1 GSAPSSAPPP APAASQTTAP SVTRGVGSDN SSNLGGASPG ESLFPGLGFN PLGGGNAMSG 60
61 LFGAGLPDLV QTQQQLAQNP NMIRDMMNTP AIQNLMNNPE FMRSMIMNNP QMRELVDRNP 120
121 ELGHVLNDPS ILRQTLEAAR NPELMREMMR NTDRAMSNIE SMPEGFNMLR RMYENVQEPL 180
181 MNATTMSG
|
| Detection Method: | |
| Confidence: | 1.01 |
| Match: | 1oqyA |
| Description: | Structure of the DNA repair protein hHR23a |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [277-342] |
1 11 21 31 41 51
| | | | | |
1 NAGNNTGSNP FAALLGNQGV TTQGSDASNN SSTPNAGTGT IPNANPLPNP WGATGGQTTA 60
61 PGRTNV
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [343-472] |
1 11 21 31 41 51
| | | | | |
1 GGDARSPGLG GLGGLGSLGG LGGLGMLGAD SPLGATPDAS QLSQLLQNPA ISQMMQSVFS 60
61 NPQYMNQLMS LNPQLRSMLD SNPQLREMMQ NPDFLRQFSS PEMMQQMMTL QQSLSQNRNT 120
121 ASQDAGQTGA
|
| Detection Method: | |
| Confidence: | 5.522879 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [473-551] |
1 11 21 31 41 51
| | | | | |
1 ATGNNGGLDL LMNMFGSLGA GGLSGTNQSN VPPEERYATQ LQQLQEMGFY DRAENIRALL 60
61 ATNGNVNAAV ERLLGSIGQ
|
| Detection Method: | |
| Confidence: | 8.09691 |
| Match: | 1vejA |
| Description: | Solution Structure of RSGI RUH-016, a UBA Domain from mouse cDNA |
Matching Structure (courtesy of the PDB): |
|
