| Protein: | SLAC1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 556 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLAC1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
345.0 | [0..1] | [546..69] |
|
Region A: Residues: [1-178] |
1 11 21 31 41 51
| | | | | |
1 MERKQSNAHS TFADINEVED EAEQELQQQE NNNNKRFSGN RGPNRGKQRP FRGFSRQVSL 60
61 ETGFSVLNRE SRERDDKKSL PRSGRSFGGF ESGGIINGGD GRKTDFSMFR TKSTLSKQKS 120
121 LLPSIIRERD IENSLRTEDG ETKDDSINEN VSAGRYFAAL RGPELDEVKD NEDILLPK
|
| Detection Method: |  |
| Confidence: | 1.32 |
| Match: | 1rw6A |
| Description: | human APP core domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.225375777463061 | bayes_pls_golite062009 |
|
Region A: Residues: [179-556] |
1 11 21 31 41 51
| | | | | |
1 EEQWPFLLRF PIGCFGICLG LSSQAVLWLA LAKSPATNFL HITPLINLVV WLFSLVVLVS 60
61 VSFTYILKCI FYFEAVKREY FHPVRVNFFF APWVVCMFLA ISVPPMFSPN RKYLHPAIWC 120
121 VFMGPYFFLE LKIYGQWLSG GKRRLCKVAN PSSHLSVVGN FVGAILASKV GWDEVAKFLW 180
181 AVGFAHYLVV FVTLYQRLPT SEALPKELHP VYSMFIAAPS AASIAWNTIY GQFDGCSRTC 240
241 FFIALFLYIS LVARINFFTG FKFSVAWWSY TFPMTTASVA TIKYAEAVPG YPSRALALTL 300
301 SFISTAMVCV LFVSTLLHAF VWQTLFPNDL AIAITKRKLT REKKPFKRAY DLKRWTKQAL 360
361 AKKISAEKDF EAEEESHH
|
| Detection Method: | |
| Confidence: | 1.15 |
| Match: | 2f93A |
| Description: | K Intermediate Structure of Sensory Rhodopsin II/Transducer Complex in Combination with the Ground State Structure |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| signal transducer activity | 0.962876380535311 | bayes_pls_golite062009 |
| molecular transducer activity | 0.962876380535311 | bayes_pls_golite062009 |
| receptor activity | 0.869047926372052 | bayes_pls_golite062009 |
| transmembrane receptor activity | 0.523578064861943 | bayes_pls_golite062009 |
| G-protein coupled receptor activity | 0.389220516476528 | bayes_pls_golite062009 |
| binding | 0.0227247310453034 | bayes_pls_golite062009 |
