YRC Public Data Repository - Protein Structure Prediction

Protein:	CPSF3_ARATH
Organism:	Arabidopsis thaliana
Length:	693 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CPSF3_ARATH.

Description	E-value	Query Range	Subject Range
gi\|18377654 - gi\|18377654\|gb\|AAL66977.1\| putative cleavage and polyadenylation specificity factor [Arabidopsis tha...	560.0	[0..1]	[693..1]
CPSF3_BOVIN - Cleavage and polyadenylation specificity factor subunit 3 OS=Bos taurus GN=CPSF3 PE=1 SV=1	544.0	[0..15]	[688..5]
gi\|194220982 - gi\|194220982\|ref\|XP_001502516.2\| PREDICTED: similar to Cleavage and Polyadenylation Specifity Factor... gi\|73979708 - gi\|73979708\|ref\|XP_540075.2\| PREDICTED: similar to Cleavage and polyadenylation specificity factor, ...	543.0	[0..15]	[688..5]
gi\|114576010, gi... - gi\|114576010\|ref\|XP_001154730.1\| PREDICTED: hypothetical protein isoform 8 [Pan troglodytes], gi\|114...	541.0	[0..15]	[688..5]
gi\|49522504, gi\|... - gi\|55741994\|ref\|NP_001006770.1\| cleavage and polyadenylation specific factor 3, 73kDa [Xenopus (Silu... gi\|55741994 - ref\|NP_001006770.1\| cleavage and polyadenylation specific factor 3, 73kDa [Xenopus tropicalis]	541.0	[0..4]	[690..1]
gi\|67969340 - gi\|67969340\|dbj\|BAE01022.1\| unnamed protein product [Macaca fascicularis]	540.0	[0..15]	[688..5]
CPSF3 - cleavage and polyadenylation specific factor 3, 73kDa	540.0	[0..15]	[688..5]
CPSF3_MOUSE - Cleavage and polyadenylation specificity factor subunit 3 OS=Mus musculus GN=Cpsf3 PE=1 SV=2	539.0	[0..15]	[688..5]

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Predicted Domain #1

Region A:
Residues: [1-464]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSTSLKR REQPISRDGD QLIVTPLGAG SEVGRSCVYM SFRGKNILFD CGIHPAYSGM  60
   61 AALPYFDEID PSSIDVLLIT HFHIDHAASL PYFLEKTTFN GRVFMTHATK AIYKLLLTDY 120
  121 VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA 180
  181 GVRILYTGDY SREEDRHLRA AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV 240
  241 AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN 300
  301 DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN 360
  361 ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY ISFSAHADYA QTSTFLKELM 420
  421 PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	102.0
Match:	2i7tA
Description:	No description for 2i7tA was found.

Predicted Domain #2

Region A:
Residues: [465-552]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FNSEKLAKTI GRLAEKTPDV GDTVSGILVK KGFTYQIMAP DELHVFSQLS TATVTQRITI  60
   61 PFVGAFGVIK HRLEKIFESV EFSTDEES

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [553-693]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLPALKVHER VTVKQESEKH ISLQWSSDPI SDMVSDSIVA LILNISREVP KIVMEEEDAV  60
   61 KSEEENGKKV EKVIYALLVS LFGDVKLGEN GKLVIRVDGN VAQLDKESGE VESEHSGLKE 120
  121 RVRVAFERIQ SAVKPIPLSA S

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits