| Protein: | CPSF3_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 693 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CPSF3_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
560.0 | [0..1] | [693..1] |
|
|
544.0 | [0..15] | [688..5] |
|
|
543.0 | [0..15] | [688..5] |
|
|
541.0 | [0..15] | [688..5] |
|
|
541.0 | [0..4] | [690..1] |
|
|
540.0 | [0..15] | [688..5] |
|
|
540.0 | [0..15] | [688..5] |
|
|
539.0 | [0..15] | [688..5] |
|
Region A: Residues: [1-464] |
1 11 21 31 41 51
| | | | | |
1 MASSSTSLKR REQPISRDGD QLIVTPLGAG SEVGRSCVYM SFRGKNILFD CGIHPAYSGM 60
61 AALPYFDEID PSSIDVLLIT HFHIDHAASL PYFLEKTTFN GRVFMTHATK AIYKLLLTDY 120
121 VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA 180
181 GVRILYTGDY SREEDRHLRA AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV 240
241 AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN 300
301 DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN 360
361 ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY ISFSAHADYA QTSTFLKELM 420
421 PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMY
|
| Detection Method: |  |
| Confidence: | 102.0 |
| Match: | 2i7tA |
| Description: | No description for 2i7tA was found. |
|
Region A: Residues: [465-552] |
1 11 21 31 41 51
| | | | | |
1 FNSEKLAKTI GRLAEKTPDV GDTVSGILVK KGFTYQIMAP DELHVFSQLS TATVTQRITI 60
61 PFVGAFGVIK HRLEKIFESV EFSTDEES
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.730 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.730 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.571 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.512 | a.138.1 | Multiheme cytochromes |
| View | Download | 0.509 | a.39.1 | EF-hand |
| View | Download | 0.505 | a.11.1 | Acyl-CoA binding protein |
| View | Download | 0.452 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.452 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.429 | d.52.9 | Description not found. |
| View | Download | 0.397 | a.39.1 | EF-hand |
|
Region A: Residues: [553-693] |
1 11 21 31 41 51
| | | | | |
1 GLPALKVHER VTVKQESEKH ISLQWSSDPI SDMVSDSIVA LILNISREVP KIVMEEEDAV 60
61 KSEEENGKKV EKVIYALLVS LFGDVKLGEN GKLVIRVDGN VAQLDKESGE VESEHSGLKE 120
121 RVRVAFERIQ SAVKPIPLSA S
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.799 | N/A | N/A | d.129.6 | Description not found. |
| View | Download | 0.678 | N/A | N/A | d.129.6 | Description not found. |
| View | Download | 0.566 | N/A | N/A | c.13.2 | Anti-sigma factor antagonist SpoIIaa |
| View | Download | 0.543 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.477 | N/A | N/A | a.79.1 | Antitermination factor NusB |
| View | Download | 0.474 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.391 | N/A | N/A | d.58.39 | Glutamyl tRNA-reductase catalytic, N-terminal domain |
| View | Download | 0.386 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.384 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.369 | N/A | N/A | b.55.1 | PH domain-like |
| View | Download | 0.369 | N/A | N/A | b.55.1 | PH domain-like |
| View | Download | 0.355 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.349 | N/A | N/A | b.42.2 | Ricin B-like lectins |
| View | Download | 0.295 | N/A | N/A | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.290 | N/A | N/A | d.144.1 | Protein kinase-like (PK-like) |
