| Protein: | LUH_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 787 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LUH_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
681.0 | [0..69] | [786..1013] |
|
|
665.0 | [0..123] | [787..716] |
|
|
661.0 | [0..150] | [786..871] |
|
|
655.0 | [0..69] | [786..874] |
|
|
649.0 | [0..70] | [786..844] |
|
|
623.0 | [0..155] | [786..617] |
|
|
619.0 | [0..92] | [786..450] |
|
Region A: Residues: [1-177] |
1 11 21 31 41 51
| | | | | |
1 MAQSNWEADK MLDVYIYDYL VKKKLHNTAK SFMTEGKVSP DPVAIDAPGG FLFEWWSVFW 60
61 DIFIARTNEK HSEAAAAYIE AQQGKAKEQQ MQIQQLQMMR QAQMQRRDPN HPSLGGPMNA 120
121 IGSEGMIGQS NASALAAKMY EERMKQPNPM NSETSQPHLD ARMALLKSAT NHHGQIV
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [178-249] |
1 11 21 31 41 51
| | | | | |
1 QGNHQGGVSA ALQQIQSRTQ QPTEIKTEVN LGTSPRQLPV DPSTVYGQGI LQSKPGMGSA 60
61 GLNPGVSGLP LK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.556 | a.65.1 | Annexin |
| View | Download | 0.556 | a.65.1 | Annexin |
| View | Download | 0.509 | a.4.1 | Homeodomain-like |
| View | Download | 0.477 | a.65.1 | Annexin |
| View | Download | 0.477 | a.65.1 | Annexin |
| View | Download | 0.457 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.417 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.377 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.358 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.356 | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [250-356] |
1 11 21 31 41 51
| | | | | |
1 GWPLTGIEQM RPGLGGPQVQ KSFLQNQSQF QLSPQQQQHQ MLAQVQAQGN MTNSPMYGGD 60
61 MDPRRFTGLP RGNLNPKDGQ QNANDGSIGS PMQSSSSKHI SMPPVQQ
|
| Detection Method: | |
| Confidence: | 17.221849 |
| Match: | 1s4uX |
| Description: | Crystal Structure analysis of the beta-propeller protein Ski8p |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [357-706] |
1 11 21 31 41 51
| | | | | |
1 SSSQQQDHLL SQQSQQNNRK RKGPSSSGPA NSTGTGNTVG PSNSQPSTPS THTPVDGVAI 60
61 AGNMHHVNSM PKGPMMYGSD GIGGLASSAN QLLQDDMDQF GDVGALEDNV ESFLSQDDGD 120
121 GGSLFGTLKR NSSVHTETSK PFSFNEVSCI RKSASKVICC SFSYDGKLLA SAGHDKKVFI 180
181 WNMETLQVES TPEEHAHIIT DVRFRPNSTQ LATSSFDKTI KIWDASDPGY FLRTISGHAA 240
241 PVMSIDFHPK KTELLCSCDS NNDIRFWDIN ASCVRAVKGA STQVRFQPRT GQFLAAASEN 300
301 TVSIFDIENN NKRVNIFKGH SSNVHSVCWS PNGELVASVS EDAVKLWSLS
|
| Detection Method: | |
| Confidence: | 56.045757 |
| Match: | 1nexB |
| Description: | Cdc4 F-box and linker domains; Cdc4 propeller domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [707-787] |
1 11 21 31 41 51
| | | | | |
1 SGDCIHELSN SGNKFHSVVF HPSYPDLLVI GGYQAIELWN TMENKCMTVA GHECVISALA 60
61 QSPSTGVVAS ASHDKSVKIW K
|
| Detection Method: | |
| Confidence: | 82.221849 |
| Match: | 2gnqA |
| Description: | No description for 2gnqA was found. |
