YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|12324976, gi\|...
Organism:	Arabidopsis thaliana
Length:	647 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12324976, gi|....

Description	E-value	Query Range	Subject Range
gi\|42562713 - gi\|42562713\|ref\|NP_175684.3\| hydrolase, alpha/beta fold family protein [Arabidopsis thaliana]	577.0	[0..3]	[644..5]
gi\|215713584, gi... - gi\|55296870\|dbj\|BAD68323.1\| alpha/beta hydrolase-like [Oryza sativa Japonica Group], gi\|55296846\|dbj... gi\|218188753 - gi\|218188753\|gb\|EEC71180.1\| hypothetical protein OsI_03062 [Oryza sativa Indica Group]	532.0	[0..2]	[647..5]
gi\|23126418, gi\|... - gi\|23126418\|ref\|ZP_00108314.1\| COG0596: Predicted hydrolases or acyltransferases (alpha/beta hydrola...	193.0	[0..355]	[639..13]
gi\|83633852, gi\|... - gi\|83645809\|ref\|YP_434244.1\| alpha/beta superfamily hydrolase/acyltransferase [Hahella chejuensis KC...	193.0	[0..305]	[641..6]

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Predicted Domain #1

Region A:
Residues: [1-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKGWFMVEK ARRCLRTVFF MVAMLVSLLV SSLPVLVAIG DVLVPTFLLS SFTCLTCYGF  60
   61 KEHLSRYAFK SSLTDIPLVS LVRSFLVICV YSLSDAPALS HGPYLGTVSL CSVVSVVLLS 120
  121 VKACVFTANS QLNDQASSSP SRQRLHLKKS WGMPVLFLSS VVFALGHMVV AYRTSCRARR 180
  181 KLLYHRVDPE AVLSCKSVFS GYQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [204-298]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVPRSPIPLV GKASKVDGEA RRKLHPSVSN DDGELPARLL ADLDSLFITV RGLTVHYKIC  60
   61 TPASPRHSIS SSVEANSMLN MPEAMVGRLK LDRNI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [299-647]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSMVTRNKLN HHHHRSYSSL FNNSSSLHDP LLDGLPTSPR LFKDIQEESC REDGINVSNF  60
   61 GATEQQDVGG NGQFGVVLVH GFGGGVFSWR HVMSSLAHQL GCVVTAFDRP GWGLTARPHK 120
  121 KDLEEREMPN PYTLDNQVDM LLAFCHEMGF ASVVLVGHDD GGLLALKAAQ RLLETKDPIK 180
  181 VKGVVLLNVS LTREVVPAFA RILLHTSLGK KHLVRPLLRT EIAQVVNRRA WYDPAKMTTD 240
  241 VLRLYKAPLH VEGWDEALHE IGRLSSEMVL PTQNALSLLK AVENLPVLVV AGAEDALVPL 300
  301 KSSQVMASKL ENSRLVAISG CGHLPHEECP KALLAAMCPF ISRLVFSED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.0
Match:	1cqzA
Description:	Epoxide hydrolase, N-terminal domain; Mammalian epoxide hydrolase, C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits