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View Structure Prediction Details

Protein: gi|5103839, gi|2...
Organism: Arabidopsis thaliana
Length: 330 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|5103839, gi|2....

Description E-value Query
Range
Subject
Range
gi|110740155 - gi|110740155|dbj|BAF01976.1| hypothetical protein [Arabidopsis thaliana]
311.0 [0..1] [330..1]

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Predicted Domain #1
Region A:
Residues: [1-330]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLQIFNNPS HGLAHLCYSS RVSCRVRLSR VLAMPPSSVL LHMDESNDLP KPKKGFCLSE  60
   61 DSRNSLNSLP ADSLLRQANT VGIIGGVSTD STLKFVKKLV DWSSNDGKSS LPFVLCSDPA 120
  121 LNKELLLYEE NSYPSLYHRE ESTPVDPKLI VENLRNKRRY LERCGAKLIL MPCHIAHIWY 180
  181 EEVCEGSLVP LLHMGECIAK ELQEAKMKPL EAGNPLRVGV MATSATLSAG FYQEKLQSNG 240
  241 FEAVLPDKAT MEHTVIPSIE AMKRKDMEGA RNLLRIALQV LLVQAVNVVM LGSDEMRDLL 300
  301 PGDDPLLKKC VDPMDALARS AIKWAENRCS 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.0
Match: 1jflA
Description: Aspartate racemase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.33753631018007 bayes_pls_golite062009
isomerase activity 0.58494479979202 bayes_pls_golite062009
racemase and epimerase activity 0.55904530107057 bayes_pls_golite062009
racemase and epimerase activity, acting on amino acids and derivatives 0.554911941249189 bayes_pls_golite062009
amino-acid racemase activity 0.04031032031265 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle