YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|10177535, gi\|...
Organism:	Arabidopsis thaliana
Length:	524 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|10177535, gi|....

Description	E-value	Query Range	Subject Range
gi\|114578028 - gi\|114578028\|ref\|XP_001147671.1\| PREDICTED: M-phase phosphoprotein 10 isoform 1 [Pan troglodytes]	275.0	[0..9]	[492..12]
gi\|109103322 - gi\|109103322\|ref\|XP_001102757.1\| PREDICTED: similar to M-phase phosphoprotein 10 isoform 2 [Macaca m...	269.0	[0..9]	[492..12]
MPP10_MOUSE - U3 small nucleolar ribonucleoprotein protein MPP10 OS=Mus musculus GN=Mphosph10 PE=1 SV=1	267.0	[0..9]	[492..12]
gi\|76615815 - gi\|76615815\|ref\|XP_873967.1\| PREDICTED: similar to M-phase phosphoprotein 10 [Bos taurus]	264.0	[0..9]	[524..30]
gi\|66849870, gi\|... - gi\|70994918\|ref\|XP_752236.1\| U3 small nucleolar ribonucleoprotein protein Mpp10 [Aspergillus fumigat... gi\|159124848 - gi\|159124848\|gb\|EDP49965.1\| U3 small nucleolar ribonucleoprotein protein Mpp10 [Aspergillus fumigatu...	258.0	[0..44]	[522..87]
gi\|157821847, gi... - gi\|34856326\|ref\|XP_238166.2\| PREDICTED: similar to U3 small nucleolar ribonucleoprotein protein MPP1...	257.0	[0..9]	[492..12]
gi\|40740848, gi\|... - gi\|67528184\|ref\|XP_661902.1\| hypothetical protein AN4298.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	255.0	[0..53]	[522..85]

Back

Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVKDSGFE ALEKLKATEP PVFLAPSSIS EDARSASQYL FMKLKPHNPK CPFDQLSSDG  60
   61 FDAEQIWQQI DMQSQPL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.903	a.28.1	ACP-like

Predicted Domain #2

Region A:
Residues: [78-304]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTSLRQEVKR FAKNPEEIRK LGKLALKVSH EDDIDEMDMD GFDSDDVDDE DKEIESNDSE  60
   61 GEDEEEEEED EEEEEEEEEE EEEEKDGDNE GIEDKFFKIK ELEEFLEEGE AEEYGIDHKN 120
  121 KKGVAQRKKQ NLSDDEDEED DDDEEEDVEF DAFAGGDDEE TDKLGKARYD DFFGGKKETK 180
  181 MKLKDLSEDE EAEIENKGNE KLSTHERARL KLQSKIEQME KANLDPK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [305-524]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HWTMQGEITA AKRPMNSALE VDLDFEHNAR PAPVITEEVT ASLEDLIKSR IIEARFDDVQ  60
   61 RAPRLPTKGK REAKELDESK SKKGLAEVYE AEYFQKANPA FAPTTHSDEL KKEASMLFKK 120
  121 LCLKLDALSH FHFTPKPVIE EMSIPNVSAI AMEEVAPVAV SDAAMLAPEE IFSGKGDIKD 180
  181 ESELTQEDRK RRRANKKRKF KAESANEPPK KALDTSTKNP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits