YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15240941, gi\|...
Organism:	Arabidopsis thaliana
Length:	506 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15240941, gi|....

Description	E-value	Query Range	Subject Range
gi\|98660193 - gi\|98660193\|dbj\|GAA02504.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	422.0	[0..55]	[505..8]
gi\|78194949, gi\|... - gi\|78223694\|ref\|YP_385441.1\| tryptophan synthase subunit beta [Geobacter metallireducens GS-15], gi\|...	422.0	[0..56]	[505..1]
gi\|82402203, gi\|... - gi\|82499770\|ref\|ZP_00885207.1\| Tryptophan synthase, beta chain-like [Caldicellulosiruptor saccharoly...	421.0	[0..56]	[503..4]
gi\|88601859, gi\|... - gi\|88601859\|ref\|YP_502037.1\| tryptophan synthase subunit beta [Methanospirillum hungatei JF-1], gi\|8...	419.0	[0..56]	[505..1]
gi\|39997474, gi\|... - gi\|39997474\|ref\|NP_953425.1\| tryptophan synthase subunit beta [Geobacter sulfurreducens PCA], gi\|399...	419.0	[0..56]	[505..1]
gi\|118579721, gi... - gi\|71839676\|ref\|ZP_00679420.1\| Tryptophan synthase, beta chain-like [Pelobacter propionicus DSM 2379...	416.0	[0..56]	[505..1]
gi\|148263796, gi... - gi\|88936978\|ref\|ZP_01142568.1\| Tryptophan synthase, beta chain-like [Geobacter uraniumreducens Rf4],...	415.0	[0..56]	[505..1]
trpB-1 - trpB-1 putative tryptophan synthase beta chain 1771765:1773129 forward MW:49412	414.0	[0..54]	[505..1]
gi\|110552567, gi... - gi\|126178022\|ref\|YP_001045987.1\| tryptophan synthase subunit beta [Methanoculleus marisnigri JR1], g...	413.0	[0..56]	[503..1]
gi\|83310886, gi\|... - gi\|83310886\|ref\|YP_421150.1\| Tryptophan synthase beta chain 2 [Magnetospirillum magneticum AMB-1], g...	412.0	[0..29]	[505..51]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQLLLPPN QFTKSVSPQV FITGDCQGFS DLTLKRKSNQ ATRVSNGSSL RVKAALRSTH  60
   61 NKSVVEIPKQ WYNLVADLSV KPPPPLHPK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [90-506]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TFEPIKPEDL AHLFPNELIK QEATQERFID IPEEVLEIYK LWRPTPLIRA KRLEKLLQTP  60
   61 ARIYFKYEGG SPAGSHKPNT AVPQAYYNAK EGVKNVVTET GAGQWGSSLA FASSLFGLDC 120
  121 EVWQVANSYH TKPYRRLMMQ TWGAKVHPSP SDLTEAGRRI LESDPSSPGS LGIAISEAVE 180
  181 VAARNEDTKY CLGSVLNHVL LHQTIIGEEC IQQMENFGET PDLIIGCTGG GSNFAGLSFP 240
  241 FIREKLKGKI NPVIRAVEPS ACPSLTKGVY AYDFGDTAGL TPLMKMHTLG HDFIPDPIHA 300
  301 GGLRYHGMAP LISHVYEQGF MEAISIPQIE CFQGAIQFAR TEGIIPAPEP THAIAATIRE 360
  361 ALRCKETGEA KVILMAMCGH GHFDLTSYDK YLKGELVDLS FSEEKIRESL SKVPHVV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	104.0
Match:	1v8zA
Description:	X-ray crystal structure of the Tryptophan Synthase b2 Subunit from Hyperthermophile, Pyrococcus furiosus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits